Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq3419 107 1e-21 seq173 107 1e-21 >seq3419 Length=4703 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 397 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 456 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 457 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 513 >seq173 Length=227986 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 226207 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 226266 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 226267 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 226323 Score = 104 bits (114), Expect = 1e-20 Identities = 94/117 (80%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| ||| ||| |||| ||||| |||| Sbjct 92772 GAACCCAAAGACTTTG-TTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCG 92830 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 92831 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 92887 Score = 100 bits (110), Expect = 2e-19 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 5 CCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATC 64 |||||||||||| |||| || ||| ||| ||| |||| ||||| |||| |||| Sbjct 78157 CCAAAGACTTTGGTTTCCCGGAAGCTGCTCGGCGGGTCATGGGAATAACGCCGCCGGATC 78216 Query 65 CCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 78217 GCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 78269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278382194580