Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq3419 190 4e-46
seq173 190 4e-46
seq7 172 1e-40
>seq3419
Length=4703
Score = 190 bits (210), Expect = 4e-46
Identities = 212/277 (77%), Gaps = 6/277 (2%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| ||| | | | ||||||||||||||||||||||||
Sbjct 794 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 736
Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
|| ||||||||| | || | |||| | ||| |||||||| ||||||||| | ||||
Sbjct 735 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 677
Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
|||||||||||||||| | || | | |||||||| ||||| | |||||| | |
Sbjct 676 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 617
Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275
|||| | |||||||||||||||||| ||||| ||| | |||||||| |
Sbjct 616 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 557
Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
| ||||| |||||||||||||||| ||||||||||
Sbjct 556 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 521
>seq173
Length=227986
Score = 190 bits (210), Expect = 4e-46
Identities = 212/277 (77%), Gaps = 6/277 (2%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| ||| | | | ||||||||||||||||||||||||
Sbjct 226604 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 226546
Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
|| ||||||||| | || | |||| | ||| |||||||| ||||||||| | ||||
Sbjct 226545 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 226487
Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
|||||||||||||||| | || | | |||||||| ||||| | |||||| | |
Sbjct 226486 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 226427
Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275
|||| | |||||||||||||||||| ||||| ||| | |||||||| |
Sbjct 226426 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 226367
Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
| ||||| |||||||||||||||| ||||||||||
Sbjct 226366 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 226331
Score = 165 bits (182), Expect = 1e-38
Identities = 209/277 (75%), Gaps = 9/277 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| ||| | | | ||||||| ||||||||||||||||
Sbjct 93165 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTT-GAAAAAATTAGAGTGT 93108
Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
|| | ||||||| | || | |||| | ||| |||||||| ||||||||| | ||||
Sbjct 93107 TCCA-GCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 93050
Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
|||||||||||||||| | || | | |||||||| ||||| | |||||| | |
Sbjct 93049 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 92990
Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275
|||| | ||||||||| |||||||| ||||| ||| | |||||||| |
Sbjct 92989 TATTGTGCCGCTAGAGGTGAA-TTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 92931
Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
| ||||| |||||||||||||||| ||||||||||
Sbjct 92930 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 92895
Score = 154 bits (170), Expect = 3e-35
Identities = 208/277 (75%), Gaps = 11/277 (4%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| ||| | | | ||||||| ||||||||||||||||
Sbjct 78545 ATGCTCTTGACTGAGTGT-CCGGGG-GCCCGAAGCGTTTACTT-GAAAAAATTAGAGTGT 78489
Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
||| ||||||| | || | |||| | ||| |||||||| ||||||||| | ||||
Sbjct 78488 CCAA-GCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 78431
Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
|||||||||||||||| | || | | |||||||| ||||| | |||||| | |
Sbjct 78430 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 78371
Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275
|||| | ||||||| |||||||||| ||||| ||| | |||||||| |
Sbjct 78370 TATTGTGCCGCTAGAGGTG-AATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 78312
Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
| ||||| ||| |||||||||||| ||||||||||
Sbjct 78311 TTGCCAAGAATG-TTTCATTAATCA-AGAACGAAAGT 78277
>seq7
Length=117177943
Score = 172 bits (190), Expect = 1e-40
Identities = 209/277 (75%), Gaps = 7/277 (3%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| |||||| || | || ||| |||||||||||||||||||||
Sbjct 88495885 ATGCTCTTGACTGAGTGTCCCGGGGGCCCGAAGAGTTT-ACTTTGAAAAAATTAGAGTGT 88495943
Query 98 TCAAAGCAGGC--CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155
|| |||||||| | | || | |||| | ||| |||||||| ||||||||| | ||||
Sbjct 88495944 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 88496002
Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215
|||||||||||||||| | || | | |||||| | ||||| | |||||| | |
Sbjct 88496003 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATT-AGAGGGACGGCCGGGGGCATTCG 88496061
Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275
|||| | |||||||||||||||||| ||||| ||| | ||||||| |
Sbjct 88496062 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAATCGAAAGCAT 88496121
Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
| ||||| |||||||||||||||| ||||||||||
Sbjct 88496122 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 88496157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915137565056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |