Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3419 190 4e-46 seq173 190 4e-46 seq7 172 1e-40 >seq3419 Length=4703 Score = 190 bits (210), Expect = 4e-46 Identities = 212/277 (77%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 794 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 736 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || ||||||||| | || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 735 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 677 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||||| ||||| | |||||| | | Sbjct 676 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 617 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | |||||||||||||||||| ||||| ||| | |||||||| | Sbjct 616 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 557 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| |||||||||||||||| |||||||||| Sbjct 556 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 521 >seq173 Length=227986 Score = 190 bits (210), Expect = 4e-46 Identities = 212/277 (77%), Gaps = 6/277 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | |||||||||||||||||||||||| Sbjct 226604 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 226546 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || ||||||||| | || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 226545 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 226487 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||||| ||||| | |||||| | | Sbjct 226486 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 226427 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | |||||||||||||||||| ||||| ||| | |||||||| | Sbjct 226426 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 226367 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| |||||||||||||||| |||||||||| Sbjct 226366 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 226331 Score = 165 bits (182), Expect = 1e-38 Identities = 209/277 (75%), Gaps = 9/277 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | ||||||| |||||||||||||||| Sbjct 93165 ATGCTCTTGACTGAGTGTCCCGGGG-GCCCGAAGCGTTTACTT-GAAAAAATTAGAGTGT 93108 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || | ||||||| | || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 93107 TCCA-GCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 93050 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||||| ||||| | |||||| | | Sbjct 93049 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 92990 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | ||||||||| |||||||| ||||| ||| | |||||||| | Sbjct 92989 TATTGTGCCGCTAGAGGTGAA-TTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 92931 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| |||||||||||||||| |||||||||| Sbjct 92930 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 92895 Score = 154 bits (170), Expect = 3e-35 Identities = 208/277 (75%), Gaps = 11/277 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| ||| | | | ||||||| |||||||||||||||| Sbjct 78545 ATGCTCTTGACTGAGTGT-CCGGGG-GCCCGAAGCGTTTACTT-GAAAAAATTAGAGTGT 78489 Query 98 TCAAAGCAGGCCT--TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 ||| ||||||| | || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 78488 CCAA-GCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 78431 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||||| ||||| | |||||| | | Sbjct 78430 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCG 78371 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | ||||||| |||||||||| ||||| ||| | |||||||| | Sbjct 78370 TATTGTGCCGCTAGAGGTG-AATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCAT 78312 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| ||| |||||||||||| |||||||||| Sbjct 78311 TTGCCAAGAATG-TTTCATTAATCA-AGAACGAAAGT 78277 >seq7 Length=117177943 Score = 172 bits (190), Expect = 1e-40 Identities = 209/277 (75%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| |||||| || | || ||| ||||||||||||||||||||| Sbjct 88495885 ATGCTCTTGACTGAGTGTCCCGGGGGCCCGAAGAGTTT-ACTTTGAAAAAATTAGAGTGT 88495943 Query 98 TCAAAGCAGGC--CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 || |||||||| | | || | |||| | ||| |||||||| ||||||||| | |||| Sbjct 88495944 TCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAGGAATAATGGAATAGGAC-TCCGGT 88496002 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAG 215 |||||||||||||||| | || | | |||||| | ||||| | |||||| | | Sbjct 88496003 TCTATTTTGTTGGTTTTCGGAACTGGGGCCATGATT-AGAGGGACGGCCGGGGGCATTCG 88496061 Query 216 TATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGT 275 |||| | |||||||||||||||||| ||||| ||| | ||||||| | Sbjct 88496062 TATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAATCGAAAGCAT 88496121 Query 276 TCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | ||||| |||||||||||||||| |||||||||| Sbjct 88496122 TTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 88496157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915137565056