Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq173 145 3e-32
seq4 140 1e-30
seq8 136 2e-29
>seq173
Length=227986
Score = 145 bits (160), Expect = 3e-32
Identities = 101/115 (88%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 75286 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 75227
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 75226 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 75172
Score = 131 bits (144), Expect = 7e-28
Identities = 125/160 (78%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||| ||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 223314 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 223255
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 223254 ACCGGCACGAGACCGATAGCGGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 223195
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 223194 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 223155
Score = 127 bits (140), Expect = 9e-27
Identities = 125/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||| ||||||||| | || ||| |||||| | | ||||| |||||||
Sbjct 76187 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 76128
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 76127 ACCGGCACGAGACCGATAGCGGACAAGTACCGTAAGGGAAAG-TGAAAAGAACTTTGAAG 76069
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||||||| || || ||||||| ||| | ||| || ||
Sbjct 76068 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 76029
Score = 127 bits (140), Expect = 9e-27
Identities = 98/114 (86%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629
||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 89921 GACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGG-AACTCTGGTGGAG 89863
Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| || |||||| ||| ||||| ||||| ||||| | |||||||||||||||
Sbjct 89862 GTCCGTAGCGGTCCTGACGTGC-AATCGGTCGTCCGACCTGGGTATAGGGGCGA 89810
Score = 120 bits (132), Expect = 1e-24
Identities = 113/143 (79%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| |||||||| ||||||||| | || ||| ||||| | | ||||| |||||||
Sbjct 90818 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAACTC-CATCTAAGGCTAAAT 90760
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| |
Sbjct 90759 ACCGGCACGAGACCGATAGCGGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 90700
Query 160 AGAGAGTTAAAAAGCACGTGAAA 182
|||||||| || || |||||||
Sbjct 90699 AGAGAGTTCAAGAGGGCGTGAAA 90677
>seq4
Length=133473341
Score = 140 bits (154), Expect = 1e-30
Identities = 100/115 (87%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 39369235 GGACCCGAAAAATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 39369176
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 39369175 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 39369121
>seq8
Length=117616046
Score = 136 bits (150), Expect = 2e-29
Identities = 100/115 (87%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 51871782 GGACCC-AAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 51871840
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
|| || |||||| ||| ||||||||||| ||||| | |||||||||||||||
Sbjct 51871841 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 51871895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079853668100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |