Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq173 145 3e-32 seq4 140 1e-30 seq8 136 2e-29 >seq173 Length=227986 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 75286 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 75227 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 75226 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 75172 Score = 131 bits (144), Expect = 7e-28 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 223314 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 223255 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 223254 ACCGGCACGAGACCGATAGCGGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 223195 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 223194 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 223155 Score = 127 bits (140), Expect = 9e-27 Identities = 125/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 76187 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 76128 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 76127 ACCGGCACGAGACCGATAGCGGACAAGTACCGTAAGGGAAAG-TGAAAAGAACTTTGAAG 76069 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 76068 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 76029 Score = 127 bits (140), Expect = 9e-27 Identities = 98/114 (86%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| Sbjct 89921 GACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGG-AACTCTGGTGGAG 89863 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || |||||| ||| ||||| ||||| ||||| | ||||||||||||||| Sbjct 89862 GTCCGTAGCGGTCCTGACGTGC-AATCGGTCGTCCGACCTGGGTATAGGGGCGA 89810 Score = 120 bits (132), Expect = 1e-24 Identities = 113/143 (79%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| ||||| | | ||||| ||||||| Sbjct 90818 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAACTC-CATCTAAGGCTAAAT 90760 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 90759 ACCGGCACGAGACCGATAGCGGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 90700 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || ||||||| Sbjct 90699 AGAGAGTTCAAGAGGGCGTGAAA 90677 >seq4 Length=133473341 Score = 140 bits (154), Expect = 1e-30 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 39369235 GGACCCGAAAAATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 39369176 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 39369175 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 39369121 >seq8 Length=117616046 Score = 136 bits (150), Expect = 2e-29 Identities = 100/115 (87%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 51871782 GGACCC-AAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 51871840 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 51871841 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 51871895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079853668100