Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq173 251 1e-64 seq7 233 3e-59 seq3419 194 3e-47 >seq173 Length=227986 Score = 251 bits (278), Expect = 1e-64 Identities = 209/251 (83%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 77779 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 77838 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || || | || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 77839 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 77896 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | ||||||||||||||||||||||||||||| Sbjct 77897 CGGGGGTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 77956 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 77957 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCT 78016 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 78017 ATCAATCTGTC 78027 Score = 251 bits (278), Expect = 1e-64 Identities = 209/251 (83%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 225831 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 225890 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || || | || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 225891 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 225948 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | ||||||||||||||||||||||||||||| Sbjct 225949 CGGGGGTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 226008 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 226009 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCT 226068 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 226069 ATCAATCTGTC 226079 Score = 248 bits (274), Expect = 1e-63 Identities = 208/250 (83%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 92400 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 92459 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || || | || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 92460 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 92517 Query 131 AGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | | | ||| |||||| | |||||||||||||||||||||||||||||| Sbjct 92518 CGGGGTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACA 92577 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 92578 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 92637 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 92638 TCAATCTGTC 92647 >seq7 Length=117177943 Score = 233 bits (258), Expect = 3e-59 Identities = 205/251 (82%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70 ||||| ||||||||||||||||| |||| | ||||||||||||| ||||||||||||||| Sbjct 88496631 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCAACACAGACCTGTTATT 88496572 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 || || | || | |||||| | |||| | |||||||||||||| | | || ||| Sbjct 88496571 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 88496514 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | ||| |||||| | ||||||||||||||||||||||||||||| Sbjct 88496513 CGGGGGTCACGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 88496454 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 88496453 AAATTGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATTGAGAAAGAGCT 88496394 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 88496393 ATCAATCTGTC 88496383 >seq3419 Length=4703 Score = 194 bits (214), Expect = 3e-47 Identities = 188/237 (79%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCAT-CACAGACCTGTTATTGCCTCAAACTTCCA 84 ||||| || | || | |||||||| ||||| ||||||||||||||||| || | || | Sbjct 38 GCGCGCGCAGGCCCGGACATCTAATGGCATACACAGACCTGTTATTGC-TCGATCT-CGT 95 Query 85 TTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG--- 141 ||||| | | || | |||||||||||||| | | || ||| | | | | | Sbjct 96 GTGGCTTAACGACACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCCGGGGGTCGCGTAA 155 Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 156 CTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 215 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 216 ACTATTAACGGCCATGCACCACCACCCACAGAATCTAGAAAGAGCTATCAATCTGTC 272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796747340982