Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq173 251 1e-64
seq7 233 3e-59
seq3419 194 3e-47
>seq173
Length=227986
Score = 251 bits (278), Expect = 1e-64
Identities = 209/251 (83%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70
||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 77779 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 77838
Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130
|| || | || | |||||| | |||| | |||||||||||||| | | || |||
Sbjct 77839 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 77896
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 77897 CGGGGGTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 77956
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 77957 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCT 78016
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 78017 ATCAATCTGTC 78027
Score = 251 bits (278), Expect = 1e-64
Identities = 209/251 (83%), Gaps = 6/251 (2%)
Strand=Plus/Plus
Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70
||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 225831 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 225890
Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130
|| || | || | |||||| | |||| | |||||||||||||| | | || |||
Sbjct 225891 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 225948
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 225949 CGGGGGTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 226008
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 226009 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCT 226068
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 226069 ATCAATCTGTC 226079
Score = 248 bits (274), Expect = 1e-63
Identities = 208/250 (83%), Gaps = 5/250 (2%)
Strand=Plus/Plus
Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70
||||| ||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 92400 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATT 92459
Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130
|| || | || | |||||| | |||| | |||||||||||||| | | || |||
Sbjct 92460 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 92517
Query 131 AGTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
| | | | ||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 92518 CGGGGTCGCGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACA 92577
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
|||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 92578 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTA 92637
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 92638 TCAATCTGTC 92647
>seq7
Length=117177943
Score = 233 bits (258), Expect = 3e-59
Identities = 205/251 (82%), Gaps = 6/251 (2%)
Strand=Plus/Minus
Query 12 TCCGT-CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 70
||||| ||||||||||||||||| |||| | ||||||||||||| |||||||||||||||
Sbjct 88496631 TCCGTTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCAACACAGACCTGTTATT 88496572
Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130
|| || | || | |||||| | |||| | |||||||||||||| | | || |||
Sbjct 88496571 GC-TCGATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGC 88496514
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 88496513 CGGGGGTCACGTAACTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 88496454
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 88496453 AAATTGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATTGAGAAAGAGCT 88496394
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 88496393 ATCAATCTGTC 88496383
>seq3419
Length=4703
Score = 194 bits (214), Expect = 3e-47
Identities = 188/237 (79%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCAT-CACAGACCTGTTATTGCCTCAAACTTCCA 84
||||| || | || | |||||||| ||||| ||||||||||||||||| || | || |
Sbjct 38 GCGCGCGCAGGCCCGGACATCTAATGGCATACACAGACCTGTTATTGC-TCGATCT-CGT 95
Query 85 TTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG--- 141
||||| | | || | |||||||||||||| | | || ||| | | | | |
Sbjct 96 GTGGCTTAACGACACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCCGGGGGTCGCGTAA 155
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 156 CTAGTTAGCATGGAGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 215
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 216 ACTATTAACGGCCATGCACCACCACCCACAGAATCTAGAAAGAGCTATCAATCTGTC 272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796747340982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |