Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq3385 331 2e-88
seq173 329 6e-88
seq7 205 2e-50
seq2 138 2e-30
>seq3385
Length=4733
Score = 331 bits (366), Expect = 2e-88
Identities = 215/235 (91%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | | || |||||||||||||||||||||||||||||
Sbjct 270 TACTGAGCAGGATTACTATTGCGACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 211
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 210 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 151
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 150 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 91
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 90 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 36
>seq173
Length=227986
Score = 329 bits (364), Expect = 6e-88
Identities = 253/295 (86%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | | || |||||||||||||||| ||||||||||||
Sbjct 100457 TACTGAGCAGGATTACTATTGCGACAACACATCATCAGTAGGGTAAA-CTAACCTGTCTC 100515
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 100516 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA-CAATCCAACGCTTGGTG 100574
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 100575 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 100634
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 100635 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTG-C 100693
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 100694 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 100748
Score = 327 bits (362), Expect = 2e-87
Identities = 246/284 (87%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 12 ATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70
||||| |||| | | || |||||||||||||||| ||||||||||||| |||||||||
Sbjct 87413 ATTACTATTGCGACAACACATCATCAGTAGGGTAAA-CTAACCTGTCTCACGACGGTCTA 87471
Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 87472 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGG-GAATTCTGCTTC 87530
Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 87531 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG 87590
Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250
| ||||||||||||||||||||||||||||||||||| |||||| || | ||| |
Sbjct 87591 CCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAA 87650
Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 87651 AAGTCAGAAGGATCGTGAGGCC-CGCTTTCACGGTCTGTATTCA 87693
>seq7
Length=117177943
Score = 205 bits (226), Expect = 2e-50
Identities = 205/265 (77%), Gaps = 16/265 (6%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
|||| ||||||||||||||||| || | || || ||||| |||||||||||||||||
Sbjct 21062679 TCATTAGTAGGGTAAAACTAACTTGCTTACCGATGGCCTAAAGCCAGCTCACGTTCCCTA 21062738
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150
||||||||||||||||||||| ||| |||||||||||| |||| ||||||||||||
Sbjct 21062739 TTAGTGGGTGAACAATCCAACCCTTGGTGAATTCTGCTTCACAATGACAGGAAGAGCCGA 21062798
Query 151 CA-TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
|| || ||||| ||||||||| |||||| |||||||||||||||||
Sbjct 21062799 CACTC---CTATCAA-----------GCTATGAACACTTGGCCGCCACAAGCCAGTTATC 21062844
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
|||||||||||||||| | ||||| | || ||| | | | | |||| ||| ||
Sbjct 21062845 CCTGTGGTAACTTTTCCGACACCT-TCTGCTTAAAACCCAAAAGTCAGAAGGGTCGTGAG 21062903
Query 270 GCCACACTTTCATGGTTTGTATTCA 294
||| | |||||| ||| ||||||||
Sbjct 21062904 GCCCCGCTTTCACGGTCTGTATTCA 21062928
>seq2
Length=170201513
Score = 138 bits (152), Expect = 2e-30
Identities = 92/101 (91%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA-CC 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 108630565 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCC 108630624
Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273
|||||| | ||| | | | |||||||||||||||||||||
Sbjct 108630625 TCTAGCTTAAAACTCCTAAAGACTAAAGGATCGATAGGCCA 108630665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854341712832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |