Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3385 331 2e-88 seq173 329 6e-88 seq7 205 2e-50 seq2 138 2e-30 >seq3385 Length=4733 Score = 331 bits (366), Expect = 2e-88 Identities = 215/235 (91%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | | || ||||||||||||||||||||||||||||| Sbjct 270 TACTGAGCAGGATTACTATTGCGACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 211 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 210 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 151 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 150 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 91 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 90 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 36 >seq173 Length=227986 Score = 329 bits (364), Expect = 6e-88 Identities = 253/295 (86%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | | || |||||||||||||||| |||||||||||| Sbjct 100457 TACTGAGCAGGATTACTATTGCGACAACACATCATCAGTAGGGTAAA-CTAACCTGTCTC 100515 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 100516 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA-CAATCCAACGCTTGGTG 100574 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 100575 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 100634 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 100635 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTG-C 100693 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 100694 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 100748 Score = 327 bits (362), Expect = 2e-87 Identities = 246/284 (87%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 12 ATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTA 70 ||||| |||| | | || |||||||||||||||| ||||||||||||| ||||||||| Sbjct 87413 ATTACTATTGCGACAACACATCATCAGTAGGGTAAA-CTAACCTGTCTCACGACGGTCTA 87471 Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 87472 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGG-GAATTCTGCTTC 87530 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 87531 ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGG 87590 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 | ||||||||||||||||||||||||||||||||||| |||||| || | ||| | Sbjct 87591 CCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAA 87650 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 87651 AAGTCAGAAGGATCGTGAGGCC-CGCTTTCACGGTCTGTATTCA 87693 >seq7 Length=117177943 Score = 205 bits (226), Expect = 2e-50 Identities = 205/265 (77%), Gaps = 16/265 (6%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||| || | || || ||||| ||||||||||||||||| Sbjct 21062679 TCATTAGTAGGGTAAAACTAACTTGCTTACCGATGGCCTAAAGCCAGCTCACGTTCCCTA 21062738 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||| Sbjct 21062739 TTAGTGGGTGAACAATCCAACCCTTGGTGAATTCTGCTTCACAATGACAGGAAGAGCCGA 21062798 Query 151 CA-TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 || || ||||| ||||||||| |||||| ||||||||||||||||| Sbjct 21062799 CACTC---CTATCAA-----------GCTATGAACACTTGGCCGCCACAAGCCAGTTATC 21062844 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| | ||||| | || ||| | | | | |||| ||| || Sbjct 21062845 CCTGTGGTAACTTTTCCGACACCT-TCTGCTTAAAACCCAAAAGTCAGAAGGGTCGTGAG 21062903 Query 270 GCCACACTTTCATGGTTTGTATTCA 294 ||| | |||||| ||| |||||||| Sbjct 21062904 GCCCCGCTTTCACGGTCTGTATTCA 21062928 >seq2 Length=170201513 Score = 138 bits (152), Expect = 2e-30 Identities = 92/101 (91%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 174 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA-CC 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 108630565 TCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCC 108630624 Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCA 273 |||||| | ||| | | | ||||||||||||||||||||| Sbjct 108630625 TCTAGCTTAAAACTCCTAAAGACTAAAGGATCGATAGGCCA 108630665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854341712832