Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01001382.1
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
seq173 86.0 4e-15
seq7 86.0 4e-15
>seq173
Length=227986
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 77588 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 77645
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 77646 TAAT-CAACGCGAGCT 77660
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 92207 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 92264
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 92265 TAAT-CAACGCGAGCT 92279
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 225637 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 225694
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 225695 TAAT-CAACGCGAGCT 225709
>seq7
Length=117177943
Score = 86.0 bits (94), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 3/76 (4%)
Strand=Plus/Minus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||
Sbjct 88496822 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 88496765
Query 109 TAATACAACGCAAGCT 124
|||| |||||| ||||
Sbjct 88496764 TAAT-CAACGCGAGCT 88496750
Score = 77.0 bits (84), Expect = 2e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand=Plus/Plus
Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108
|||||||| |||| || ||||||||| |||| |||||| |||||||||||||||||||
Sbjct 87989172 CTCACTAAACCATC-CAATCGGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 87989229
Query 109 TAATACAACGC 119
|||| ||||||
Sbjct 87989230 TAAT-CAACGC 87989239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 300780761960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |