Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq3419 89.7 6e-16 seq173 89.7 6e-16 seq7 89.7 6e-16 >seq3419 Length=4703 Score = 89.7 bits (98), Expect = 6e-16 Identities = 141/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 661 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 719 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 |||||||| ||||||||||||||| |||| ||||| | || || | | ||| Sbjct 720 ACGCGGCCTGCTTGGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCCGGGACA 779 Query 128 C-CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| ||| | || ||||| | |||||||| | || ||| ||||| Sbjct 780 CTCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGC 839 Query 183 CGTGAGGCGGACC 195 | |||||||| Sbjct 840 CTCACGGCGGACC 852 >seq173 Length=227986 Score = 89.7 bits (98), Expect = 6e-16 Identities = 141/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 226471 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 226529 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 |||||||| ||||||||||||||| |||| ||||| | || || | | ||| Sbjct 226530 ACGCGGCCTGCTTGGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCCGGGACA 226589 Query 128 C-CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| ||| | || ||||| | |||||||| | || ||| ||||| Sbjct 226590 CTCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGC 226649 Query 183 CGTGAGGCGGACC 195 | |||||||| Sbjct 226650 CTCACGGCGGACC 226662 Score = 84.2 bits (92), Expect = 3e-14 Identities = 142/193 (74%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 78415 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 78473 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 |||||||| || |||||||||||| |||| ||||| | | | | || ||| ||| Sbjct 78474 ACGCGGCCTGCTTGGA-CACTCTAATTTTTTCAA-GTAAACG-CTTCGGGCCCCCGGACA 78530 Query 128 C-CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| ||| | || ||||| | |||||||| | || ||| ||||| Sbjct 78531 CTCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGC 78590 Query 183 CGTGAGGCGGACC 195 | |||||||| Sbjct 78591 CTCACGGCGGACC 78603 Score = 78.8 bits (86), Expect = 1e-12 Identities = 140/193 (73%), Gaps = 10/193 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 93034 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 93092 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACA 127 ||||||| ||||||||||||||| |||| ||||| | || || | | ||| Sbjct 93093 ACGCGGCCTGCTG-GAACACTCTAATTTTTTCAA-GTAAACGCTTCGGGCCCCCGGGACA 93150 Query 128 C-CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCGC 182 | || | ||| |||| ||| | || ||||| | |||||||| | || ||| ||||| Sbjct 93151 CTCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCGC 93210 Query 183 CGTGAGGCGGACC 195 | |||||||| Sbjct 93211 CTCACGGCGGACC 93223 >seq7 Length=117177943 Score = 89.7 bits (98), Expect = 6e-16 Identities = 143/194 (74%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||| ||| | |||| | |||| Sbjct 88496018 AAACCAACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGAAGTATCCAGGCG 88495960 Query 70 TAA--GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCT-GGTTCCTCCGCAC 126 |||||||| ||||||||||||||| |||| || ||| || | || || | | || Sbjct 88495959 ACGCGGCCTGCTTGGAACACTCTAATTTTTTCAAAGT-AAACTCTTCGGGCCCCCGGGAC 88495901 Query 127 AC-CAATGAAG-GCATACGGG-CTCACCAAGAGGTA-GGGCTGGGTAATGCAGTA-CTCG 181 || || | ||| |||| ||| | || ||||| | |||||||| | || ||| |||| Sbjct 88495900 ACTCAGTCAAGAGCATCGGGGAGGCGCCGAGAGGCAGGGGCTGGGACAGGCGGTAGCTCG 88495841 Query 182 CCGTGAGGCGGACC 195 || |||||||| Sbjct 88495840 CCTCACGGCGGACC 88495827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595160664348