Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3419 104 2e-20 seq173 104 2e-20 seq7 95.1 1e-17 >seq3419 Length=4703 Score = 104 bits (114), Expect = 2e-20 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||| |||||||| | | || | |||| | | | | Sbjct 759 TTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAG 700 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 699 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 642 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 641 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 587 >seq173 Length=227986 Score = 104 bits (114), Expect = 2e-20 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||| |||||||| | | || | |||| | | | | Sbjct 226569 TTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAG 226510 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 226509 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 226452 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 226451 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 226397 Score = 78.8 bits (86), Expect = 1e-12 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATG 70 ||||||| ||||||||||||| || ||| ||||||| | || | |||| | | | | Sbjct 78511 TTTACTT-GAAAAAATTAGAGTGTCCAA-GCAGGCCGCGTCGCCTGGATACTTCAGCTAG 78454 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 78453 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 78396 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | ||||| |||||||||| Sbjct 78395 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTG-AATTCTTGGA 78342 Score = 78.8 bits (86), Expect = 1e-12 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT--TTGCTCGAATACATTACCATG 70 ||||||| ||||||||||||| |||| | ||||||| | || | |||| | | | | Sbjct 93130 TTTACTT-GAAAAAATTAGAGTGTTCCA-GCAGGCCGCGTCGCCTGGATACTTCAGCTAG 93073 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 93072 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 93015 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | ||||| |||||||||| Sbjct 93014 TAAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTG-AATTCTTGGA 92961 >seq7 Length=117177943 Score = 95.1 bits (104), Expect = 1e-17 Identities = 129/175 (74%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC--CTTTGCTCGAATACATTACCATG 70 ||||||||||||||||||||| |||| |||||||| | | || | |||| | | | | Sbjct 88495920 TTTACTTTGAAAAAATTAGAGTGTTCCAAGCAGGCCGCGTCGCCTGGATACTTCAGCTAG 88495979 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 ||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 88495980 GAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGAT 88496037 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 88496038 -TAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 88496091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511966162880