Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq173 188 1e-45 seq7 172 1e-40 >seq173 Length=227986 Score = 188 bits (208), Expect = 1e-45 Identities = 201/259 (78%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | | ||| |||||||||||||||| Sbjct 225933 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATCGAG-CAATAACAGGTCTGTG 225876 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | Sbjct 225875 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTGTGTCTAC 225816 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| |||| |||| |||||| | ||| ||| | || |||| | ||||| | | ||| Sbjct 225815 CCTACGCCGACAGGTGCGGGTAACCC-GTTGAACCCCGTTCGTGATAGGGATCGGGGATT 225757 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 225756 GCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGAT 225697 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 225696 TAAGTCCCTGCCCTTTGTA 225678 Score = 185 bits (204), Expect = 2e-44 Identities = 201/259 (78%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | | ||| |||||||||||||||| Sbjct 92502 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATCGAG-CAATAACAGGTCTGTG 92445 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | Sbjct 92444 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTGTGTCTAC 92385 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| |||| |||| |||||| | ||| ||| | || |||| | ||||| | | ||| Sbjct 92384 CCTACGCCGACAGGTGCGGGTAACCC-GTTGAACCCCGTTCGTGATAGGGATCGGGGATT 92326 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 92325 GCAATTATTTCCCATGAACGAGGAAT-CCCAGTAAGTGCGGGTCATAAGCTCGCGTTGAT 92267 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 92266 TAAGTCCCTGCCCTTTGTA 92248 Score = 168 bits (186), Expect = 1e-39 Identities = 197/258 (76%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | | ||| |||||||||||||||| Sbjct 77881 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATCGAG-CAATAACAGGTCTGTG 77824 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||||||||||| | || || || | Sbjct 77823 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTGTGTCTAC 77764 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | || || | | ||||| | ||||| | | | || Sbjct 77763 CCTACGCCGACAGGTGCGGGTAA-CCCGTGAACCCCGTTCGTGATAGGGATCGGGGA-TG 77706 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||||||| || || |||||| ||| ||||| ||| |||||||||| Sbjct 77705 CAATTATTTCCCATGAACGAGG-ATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 77647 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 77646 AAGTCCCTGCCCTTTGTA 77629 >seq7 Length=117177943 Score = 172 bits (190), Expect = 1e-40 Identities = 198/259 (76%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | | ||| |||||||||||||||| Sbjct 88496529 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATCGAG-CAATAACAGGTCTGTG 88496586 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||| | |||| |||||||||||||||||| | || || || | Sbjct 88496587 TTGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTGTGTCTAC 88496646 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| |||| |||| |||||| | ||| ||| | || |||| | ||| | | ||| Sbjct 88496647 CCTACGCCGACAGGTGCGGGTAACCC-GTTGAACCCCGTTCGTGATAGGG---GGGGATT 88496702 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 88496703 GCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGAT 88496762 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 88496763 TAAGTCCCTGCCCTTTGTA 88496781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947135382016