Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq173 526 7e-147 seq8 170 6e-40 seq2 167 8e-39 seq1146 127 7e-27 seq7 104 8e-20 seq6 95.1 4e-17 seq11 87.8 6e-15 >seq173 Length=227986 Score = 526 bits (582), Expect = 7e-147 Identities = 456/556 (82%), Gaps = 36/556 (6%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 87725 CTTCTGCTC-ACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 87783 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||| ||||||||||| || |||| || ||| || Sbjct 87784 GTTTGACAGGTGTACCGCCCCAGTCAA-CTCCCCACCTGCCACTGTCCTCGGAGCGGGTC 87842 Query 127 G-GCCCG-CGAAGGAC----CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTT 174 | ||||| || || | ||| |||||| | |||| | || Sbjct 87843 GCGCCCGGCGCGGGCCGGCGCTTGGGTCCAGAAGCGAGAGCCCCTCGGGCTCGCCCCC-- 87900 Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC------------ 222 |||| ||| | ||||| ||||||||||||| ||||||||||||||| Sbjct 87901 CCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCGCCCC 87960 Query 223 -TTGCGCCGAAA-CGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277 ||||| ||| ||| ||||||||||| |||||||||||| ||| |||||| | Sbjct 87961 TTTGCGGCGAGCGCGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTGC 88020 Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 88021 AGACTAGAGTCAAGCTCAACAGG-TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCC 88079 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 88080 TTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCAT 88139 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 88140 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG-TACTCCC 88198 Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 88199 GCCGTTTACCCGCGCTTCATTGAATTTCTTCAC-TTGACATTCAGAGCACTGGGCAGAAA 88257 Query 518 TCACATTGCGTCAACA 533 |||||| ||||||||| Sbjct 88258 TCACATCGCGTCAACA 88273 Score = 410 bits (454), Expect = 4e-112 Identities = 236/242 (98%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 72429 CTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 72488 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 72489 GCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATT 72548 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72549 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 72608 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 72609 CTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAA 72668 Query 532 CA 533 || Sbjct 72669 CA 72670 Score = 165 bits (182), Expect = 3e-38 Identities = 234/325 (72%), Gaps = 32/325 (10%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 100781 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 100840 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| || ||| || Sbjct 100841 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCTCGGAGCGGGTC 100900 Query 127 G-GCCC-GCGAAGGAC------CTTAACGCCAGAA---AATG---GTCGGTGAAGACCAG 172 | |||| ||| || | ||| |||||| | | |||| | || Sbjct 100901 GCGCCCGGCGCGGGGCCGGGCGCTTGGGTCCAGAAGCGAGAGCCCCTCGGGGCTCGCC-C 100959 Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC---------- 222 |||| ||| | ||||| ||||||||||||| ||||||||||||||| Sbjct 100960 CCCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCGCC 101019 Query 223 ---TTGCGCCGA-AACGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG 275 ||||| ||| ||| ||||||||||| |||||||||||| ||| |||||| Sbjct 101020 CCTTTGCGGCGAGCGCGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTT 101079 Query 276 TCGGACTAGAGTCAAGCTCAACAGG 300 | |||||||||||||||||||||| Sbjct 101080 GCAGACTAGAGTCAAGCTCAACAGG 101104 Score = 109 bits (120), Expect = 2e-21 Identities = 64/65 (98%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 101203 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG-TTAC 101261 Query 467 CCGCG 471 ||||| Sbjct 101262 CCGCG 101266 >seq8 Length=117616046 Score = 170 bits (188), Expect = 6e-40 Identities = 103/109 (94%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 51872509 TTTGGCTACCTTAAGAGAGTCATAGTTACTCTCGCCGTTTACCCGCGCTTCATTGAATTT 51872450 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 51872449 TTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCTTCAACA 51872401 >seq2 Length=170201513 Score = 167 bits (184), Expect = 8e-39 Identities = 95/97 (98%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 37483611 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCT 37483552 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 ||||||||||||||||||||||||||||||||||||| Sbjct 37483551 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 37483515 Score = 114 bits (126), Expect = 4e-23 Identities = 128/176 (73%), Gaps = 30/176 (17%) Strand=Plus/Minus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||| |||||| |||||||||||||| |||||||||||| | ||||| Sbjct 127635731 TAGTTGATAGGAACAGTGGGAATCTC----ATCCATTCATGC----------ATGGATGA 127635686 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 | |||||||| ||||||| |||||| ||||| |||||||||| |||||||||| Sbjct 127635685 CAAGGCATTTAGCTACCTCAAGAGAATCATAATTACTCCCGCAGTTTACCCGC------- 127635633 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||||| ||| ||| |||||||||||||| ||||| ||||||| Sbjct 127635632 ---------ACATTTTGAAATTTAGATCACTGGGCAGAAATTGCATTGTGTCAACA 127635586 >seq1146 Length=13506 Score = 127 bits (140), Expect = 7e-27 Identities = 159/217 (73%), Gaps = 27/217 (12%) Strand=Plus/Minus Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCAC-------------TTGCGCCGAA-ACGG- 236 |||||||| |||||| ||||||||||||||| ||| | ||| |||| Sbjct 12795 TAAAAAAATGATAAGAGTAGTGGTATTTCACCGGCGGCGCCCTTTTGTGGCGAGCACGGG 12736 Query 237 ---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 ||||||||||| |||||||||||| ||| |||||| | ||||||||||||||| Sbjct 12735 GGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTGCAGACTAGAGTCAAGCT 12676 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 || | ||| | | ||| ||||| | |||||||||||||||| || Sbjct 12675 TGG-AGAGATGTCTAGCAGCA-TGAG-------AGCCCATACCCTTGGCTGTGGTTTTGC 12625 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 ||||||||||||||||||||||||||||||||| ||| Sbjct 12624 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTCATC 12588 >seq7 Length=117177943 Score = 104 bits (114), Expect = 8e-20 Identities = 216/320 (68%), Gaps = 35/320 (11%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| ||| |||| | ||||||||| ||| | Sbjct 93102670 CTTCTGCTCCATGGGAGGTTTCTGTCTTCCCTGAGCTCGCCTTAGGAC-------TTACG 93102722 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| || ||| Sbjct 93102723 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCTCGGAGCGG--- 93102779 Query 127 GGCC---CGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183 |||| || || || || || ||| | || | || |||| || Sbjct 93102780 GGCCAGATGCTTGGGTCCAGAA-GCGAGAGCCCCTTGGGGCTTGCCC---CCCGCCCCAC 93102835 Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC-------------TTGCGCCG 230 || ||||| ||||||| ||||| ||||||||||||| | ||||| | Sbjct 93102836 TGGGTAAGTGAAAAAACTATAAGAGTAGTGGTATTTCCCCGGCGGCGCCCCTTTGCGGTG 93102895 Query 231 A-AACGG----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285 | ||| ||||||||||| |||||||||||| ||| |||||| | | ||||| Sbjct 93102896 AGCGCGGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTGCAGCCTAGA 93102955 Query 286 GTCAAGCTCAACAGGGTCTT 305 |||||||||||||| | ||| Sbjct 93102956 GTCAAGCTCAACAGAGGCTT 93102975 Score = 82.4 bits (90), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAAC-TCCCCACCT 104 |||||||||||||||||||||| || |||| ||| | ||||||| ||||| ||||||||| Sbjct 43488621 CCTTAGGACACCTGCGTTATGGCTTGACAGCTGTACTGCCCCAGTCAAACTTCCCCACCT 43488562 Query 105 GACAATGTCATC 116 | || |||| || Sbjct 43488561 GCCACTGTCCTC 43488550 >seq6 Length=135134832 Score = 95.1 bits (104), Expect = 4e-17 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 || ||||||||| ||| | |||||||||||||||||||||| | |||||||||||||| Sbjct 32349629 CCATTTACCCGCACTTCACTTAATTTCTTCACTTTGACATTCAAAACACTGGGCAGAAAT 32349570 Query 519 CACATTGCGTCAACA 533 |||||| |||||||| Sbjct 32349569 CACATTACGTCAACA 32349555 Score = 75.2 bits (82), Expect = 4e-11 Identities = 50/55 (91%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||||||||||| | | ||||||||||||||||||||||||| ||| Sbjct 72172447 TGAATTTCTTCACTTTGACACT--GGGCACTGGGCAGAAATCACATTGCGTTAAC 72172499 >seq11 Length=2091522 Score = 87.8 bits (96), Expect = 6e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81 || ||||||| |||| |||| | ||||||| ||||||| ||| ||||| ||| | | | Sbjct 853820 AGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGGCACCTGCATTACGGTTTGGCAGGTATAC 853879 Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 |||||||| ||||||||||| ||| || |||| ||| Sbjct 853880 CGCCCCAGTCAAACTCCCCAACTGCCACTGTCCTCA 853915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635088446656