Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13]
6,822 sequences; 1,440,398,454 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq173 526 7e-147
seq8 170 6e-40
seq2 167 8e-39
seq1146 127 7e-27
seq7 104 8e-20
seq6 95.1 4e-17
seq11 87.8 6e-15
>seq173
Length=227986
Score = 526 bits (582), Expect = 7e-147
Identities = 456/556 (82%), Gaps = 36/556 (6%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 87725 CTTCTGCTC-ACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 87783
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||| ||| ||||||||| ||| ||||||||||| || |||| || ||| ||
Sbjct 87784 GTTTGACAGGTGTACCGCCCCAGTCAA-CTCCCCACCTGCCACTGTCCTCGGAGCGGGTC 87842
Query 127 G-GCCCG-CGAAGGAC----CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGTT 174
| ||||| || || | ||| |||||| | |||| | ||
Sbjct 87843 GCGCCCGGCGCGGGCCGGCGCTTGGGTCCAGAAGCGAGAGCCCCTCGGGCTCGCCCCC-- 87900
Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC------------ 222
|||| ||| | ||||| ||||||||||||| |||||||||||||||
Sbjct 87901 CCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCGCCCC 87960
Query 223 -TTGCGCCGAAA-CGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277
||||| ||| ||| ||||||||||| |||||||||||| ||| |||||| |
Sbjct 87961 TTTGCGGCGAGCGCGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTGC 88020
Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 88021 AGACTAGAGTCAAGCTCAACAGG-TCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCC 88079
Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 88080 TTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCAT 88139
Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC 457
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 88140 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG-TACTCCC 88198
Query 458 GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 88199 GCCGTTTACCCGCGCTTCATTGAATTTCTTCAC-TTGACATTCAGAGCACTGGGCAGAAA 88257
Query 518 TCACATTGCGTCAACA 533
|||||| |||||||||
Sbjct 88258 TCACATCGCGTCAACA 88273
Score = 410 bits (454), Expect = 4e-112
Identities = 236/242 (98%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 72429 CTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 72488
Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 72489 GCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATT 72548
Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72549 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 72608
Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 72609 CTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAA 72668
Query 532 CA 533
||
Sbjct 72669 CA 72670
Score = 165 bits (182), Expect = 3e-38
Identities = 234/325 (72%), Gaps = 32/325 (10%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 100781 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 100840
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||| ||| ||||||||| ||||||||||||||| || |||| || ||| ||
Sbjct 100841 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCTCGGAGCGGGTC 100900
Query 127 G-GCCC-GCGAAGGAC------CTTAACGCCAGAA---AATG---GTCGGTGAAGACCAG 172
| |||| ||| || | ||| |||||| | | |||| | ||
Sbjct 100901 GCGCCCGGCGCGGGGCCGGGCGCTTGGGTCCAGAAGCGAGAGCCCCTCGGGGCTCGCC-C 100959
Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC---------- 222
|||| ||| | ||||| ||||||||||||| |||||||||||||||
Sbjct 100960 CCCCGCCTCACCGGGTAAGTGAAAAAACGATAAGAGTAGTGGTATTTCACCGGCGGCGCC 101019
Query 223 ---TTGCGCCGA-AACGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG 275
||||| ||| ||| ||||||||||| |||||||||||| ||| ||||||
Sbjct 101020 CCTTTGCGGCGAGCGCGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTT 101079
Query 276 TCGGACTAGAGTCAAGCTCAACAGG 300
| ||||||||||||||||||||||
Sbjct 101080 GCAGACTAGAGTCAAGCTCAACAGG 101104
Score = 109 bits (120), Expect = 2e-21
Identities = 64/65 (98%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 101203 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG-TTAC 101261
Query 467 CCGCG 471
|||||
Sbjct 101262 CCGCG 101266
>seq8
Length=117616046
Score = 170 bits (188), Expect = 6e-40
Identities = 103/109 (94%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 51872509 TTTGGCTACCTTAAGAGAGTCATAGTTACTCTCGCCGTTTACCCGCGCTTCATTGAATTT 51872450
Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 51872449 TTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCTTCAACA 51872401
>seq2
Length=170201513
Score = 167 bits (184), Expect = 8e-39
Identities = 95/97 (98%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 37483611 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCT 37483552
Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
|||||||||||||||||||||||||||||||||||||
Sbjct 37483551 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 37483515
Score = 114 bits (126), Expect = 4e-23
Identities = 128/176 (73%), Gaps = 30/176 (17%)
Strand=Plus/Minus
Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417
|||| |||||| |||||||||||||| |||||||||||| | |||||
Sbjct 127635731 TAGTTGATAGGAACAGTGGGAATCTC----ATCCATTCATGC----------ATGGATGA 127635686
Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477
| |||||||| ||||||| |||||| ||||| |||||||||| ||||||||||
Sbjct 127635685 CAAGGCATTTAGCTACCTCAAGAGAATCATAATTACTCCCGCAGTTTACCCGC------- 127635633
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|| ||||| ||| ||| |||||||||||||| ||||| |||||||
Sbjct 127635632 ---------ACATTTTGAAATTTAGATCACTGGGCAGAAATTGCATTGTGTCAACA 127635586
>seq1146
Length=13506
Score = 127 bits (140), Expect = 7e-27
Identities = 159/217 (73%), Gaps = 27/217 (12%)
Strand=Plus/Minus
Query 192 TaaaaaaaCGATAAGGGTAGTGGTATTTCAC-------------TTGCGCCGAA-ACGG- 236
|||||||| |||||| ||||||||||||||| ||| | ||| ||||
Sbjct 12795 TAAAAAAATGATAAGAGTAGTGGTATTTCACCGGCGGCGCCCTTTTGTGGCGAGCACGGG 12736
Query 237 ---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293
||||||||||| |||||||||||| ||| |||||| | |||||||||||||||
Sbjct 12735 GGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTGCAGACTAGAGTCAAGCT 12676
Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353
|| | ||| | | ||| ||||| | |||||||||||||||| ||
Sbjct 12675 TGG-AGAGATGTCTAGCAGCA-TGAG-------AGCCCATACCCTTGGCTGTGGTTTTGC 12625
Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390
||||||||||||||||||||||||||||||||| |||
Sbjct 12624 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTCATC 12588
>seq7
Length=117177943
Score = 104 bits (114), Expect = 8e-20
Identities = 216/320 (68%), Gaps = 35/320 (11%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| | |||| ||||||| ||| |||| | ||||||||| ||| |
Sbjct 93102670 CTTCTGCTCCATGGGAGGTTTCTGTCTTCCCTGAGCTCGCCTTAGGAC-------TTACG 93102722
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| |||| ||| ||||||||| ||||||||||||||| || |||| || |||
Sbjct 93102723 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTCCTCGGAGCGG--- 93102779
Query 127 GGCC---CGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCAT 183
|||| || || || || || ||| | || | || |||| ||
Sbjct 93102780 GGCCAGATGCTTGGGTCCAGAA-GCGAGAGCCCCTTGGGGCTTGCCC---CCCGCCCCAC 93102835
Query 184 TGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC-------------TTGCGCCG 230
|| ||||| ||||||| ||||| ||||||||||||| | ||||| |
Sbjct 93102836 TGGGTAAGTGAAAAAACTATAAGAGTAGTGGTATTTCCCCGGCGGCGCCCCTTTGCGGTG 93102895
Query 231 A-AACGG----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGA 285
| ||| ||||||||||| |||||||||||| ||| |||||| | | |||||
Sbjct 93102896 AGCGCGGGGGCCTCCCACTTATCCTACACCTCTCATGTCTCTTCACAGTTGCAGCCTAGA 93102955
Query 286 GTCAAGCTCAACAGGGTCTT 305
|||||||||||||| | |||
Sbjct 93102956 GTCAAGCTCAACAGAGGCTT 93102975
Score = 82.4 bits (90), Expect = 2e-13
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAAC-TCCCCACCT 104
|||||||||||||||||||||| || |||| ||| | ||||||| ||||| |||||||||
Sbjct 43488621 CCTTAGGACACCTGCGTTATGGCTTGACAGCTGTACTGCCCCAGTCAAACTTCCCCACCT 43488562
Query 105 GACAATGTCATC 116
| || |||| ||
Sbjct 43488561 GCCACTGTCCTC 43488550
>seq6
Length=135134832
Score = 95.1 bits (104), Expect = 4e-17
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 459 CCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518
|| ||||||||| ||| | |||||||||||||||||||||| | ||||||||||||||
Sbjct 32349629 CCATTTACCCGCACTTCACTTAATTTCTTCACTTTGACATTCAAAACACTGGGCAGAAAT 32349570
Query 519 CACATTGCGTCAACA 533
|||||| ||||||||
Sbjct 32349569 CACATTACGTCAACA 32349555
Score = 75.2 bits (82), Expect = 4e-11
Identities = 50/55 (91%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532
|||||||||||||||||||| | | ||||||||||||||||||||||||| |||
Sbjct 72172447 TGAATTTCTTCACTTTGACACT--GGGCACTGGGCAGAAATCACATTGCGTTAAC 72172499
>seq11
Length=2091522
Score = 87.8 bits (96), Expect = 6e-15
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 22 AGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGC 81
|| ||||||| |||| |||| | ||||||| ||||||| ||| ||||| ||| | | |
Sbjct 853820 AGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGGCACCTGCATTACGGTTTGGCAGGTATAC 853879
Query 82 CGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117
|||||||| ||||||||||| ||| || |||| |||
Sbjct 853880 CGCCCCAGTCAAACTCCCCAACTGCCACTGTCCTCA 853915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635088446656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |