Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq106 131 1e-25 seq6 100 2e-16 seq5 95.1 1e-14 >seq106 Length=555726 Score = 131 bits (144), Expect = 1e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || || |||||||| |||||||| |||||||||| ||||| || Sbjct 346852 GGTGTACTCCACGATCTCTGTGCACAGGTTACTGCACTTAATGGTGCCCAGGTTCTGCTG 346793 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||| |||||||| || || ||||||||||||| |||||| |||||||| ||||| || Sbjct 346792 ATTGCTCTTGCGGTTACAGGCATCCTTGTACAGCATGTAGGGAGTGCCAGTCTCCGTCTG 346733 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||| || ||||||| ||| || | ||||||||| Sbjct 346732 CGACTCTATAATGGCGTACCACAGCTGCTGGGCCTTCACC 346693 >seq6 Length=135134832 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||||||||| ||||||| || || || || |||||||||| Sbjct 118782254 TGGAGCGCTTCAGTCAGGAGGTGCAAGTCCCGGAGGCTCGCTGCTTTTATGGCTTCCAGA 118782313 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || ||| |||||||| || || ||||||||||| | ||||| || || ||||| Sbjct 118782314 TTCTCATAGAGAATGTTCATTCAGAGATGTACAGCCTGCTCATAGAGACCTACAT 118782368 >seq5 Length=146437384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| |||||||| | ||||| || || || || |||||||| | Sbjct 134154512 TGGAGCGCTTCAGCCAGGAAGTGCAAGTAACCGAGGCTCGCTGCTTTTATGGCTTCCAAA 134154571 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||| ||||||||| | || || ||||||||||| |||| ||||| || ||||| Sbjct 134154572 TTGCAATGGAGAATATTCATTCTGAGATGTACAGCCTTCTTATCGACACCTACAT 134154626 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 61262 GTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 |||| || || || |||||||| | ||||| || || || || |||||||| ||||| | Sbjct 134142862 GTTTAGC-CAAGAAGTGCAAGTTACAGAGGCTCGCTGCTTTTATGGCTTCCAAATTGCAA 134142920 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||| | || || ||||||||||| |||| || || || ||||||| Sbjct 134142921 TGGAGAATATTCATTCTGAGATGTACAGCCTTCTTATTGACACCTACATCA 134142971 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 61724 AGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGT 61783 |||||||| | ||||| |||||||| || |||||||| ||||||||| | ||||| Sbjct 134143914 AGGAATTTTTAACTGAAGCTTTGCCTGTAAATCTCATCGGAATGAATTGTACATTAATGA 134143973 Query 61784 CGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 ||||||||| ||||||||||| || ||||| Sbjct 134143974 AGCAGTATATCGAATTTGTTGCAGATCGTCT 134144004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534944954080