Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq205 105 1e-20
seq126 96.9 6e-18
seq18 87.8 3e-15
seq5 77.0 6e-12
>seq205
Length=6054944
Score = 105 bits (116), Expect = 1e-20
Identities = 167/235 (71%), Gaps = 17/235 (7%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCATG 131
|||||||||||||||||| |||||||||||||||| || | |||| ||| |
Sbjct 3764293 TTACTTTGAAAAAATTAGTGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAG 3764352
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| ||||||||| ||||||||||||||||||||| || || | | | ||||
Sbjct 3764353 GAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTTTCAGAACTGAAGATAAGATT 3764411
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGGA 245
|| ||| || | | | ||| | ||||| |||||||||||||||||
Sbjct 3764412 AAGAGG---AGCTGCTAG----AACATTTATATTGTGCCACTAGAGGTGAAATTCTTGGG 3764464
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
| |||| || | | |||||| || ||||| ||||||||||||||||
Sbjct 3764465 CCAGTGCAAGATGGACCAGCGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 3764519
>seq126
Length=9965562
Score = 96.9 bits (106), Expect = 6e-18
Identities = 191/278 (69%), Gaps = 6/278 (2%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| | || || || ||| | || ||||||||||||||| | ||||||
Sbjct 7378540 ATGCTCTTAACTAAGCGTCCCATGGGGCCCAAAACGTTTACTTTGAAAAAACTGGAGTGT 7378599
Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||| ||||||| || |||||| ||| |||| ||| ||| ||||| ||||
Sbjct 7378600 TCAAACCAGGCCTGAGCCGCCTGAATACTGCAGCTAGGAAAAATGGAAAAGGAC-CGCGG 7378658
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
|||||||||| |||||| | | | |||||||| ||| || | | | | |
Sbjct 7378659 TTCTATTTTGCTGGTTTTCGAAATTGAGGCCATGATTAAGAGGAATGGCCAGCAATATTT 7378718
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| || |||| ||||||||||| || || | || |||||
Sbjct 7378719 GTATTGCGCTGCTAGAGATGAAATTCTTGTCCCAGCGCAATTTGGACCAGAGCAAAAGCA 7378778
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 7378779 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 7378815
>seq18
Length=32156441
Score = 87.8 bits (96), Expect = 3e-15
Identities = 104/139 (75%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130
|||||||||| || |||||||||||||||||||||| |||| |||| |||
Sbjct 6576412 TTTACTTTGACAATATTAGAGTGTTCAAAGCAGGCCCAAGCTGCTTAGATACCGCAGCTA 6576471
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| ||||| ||||||||| | |||||||||||||||| || | || | | |||||
Sbjct 6576472 GGCATAATGGAATAGGAC-CGTGGTTCTATTTTGTTGGATTTCGGAACTGAGGCCATGAT 6576530
Query 191 TAATAGGGATAGTCGGGGG 209
|| ||||| || |||||
Sbjct 6576531 TATGAGGGACAGCAGGGGG 6576549
>seq5
Length=45607681
Score = 77.0 bits (84), Expect = 6e-12
Identities = 94/127 (74%), Gaps = 10/127 (8%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133
|||||||||| ||| ||| |||||||||||||| || ||| |||| |||
Sbjct 14336336 TTTACTTTGAGAAA-TTACAGTGTTCAAAGCAGACCCAAGCT--------GTAGCTAGGA 14336286
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
||||| || ||||| ||||||||| |||||||||| ||| || | | ||||||||
Sbjct 14336285 ATAATGCAAAAGGAC-CACGGTTCTATGTTGTTGGTTTTTAGAACTGACACCATGATTAA 14336227
Query 194 TAGGGAT 200
||||||
Sbjct 14336226 GAGGGAT 14336220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915012384000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |