Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq205 105 1e-20 seq126 96.9 6e-18 seq18 87.8 3e-15 seq5 77.0 6e-12 >seq205 Length=6054944 Score = 105 bits (116), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 17/235 (7%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCATG 131 |||||||||||||||||| |||||||||||||||| || | |||| ||| | Sbjct 3764293 TTACTTTGAAAAAATTAGTGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAG 3764352 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||||| ||||||||||||||||||||| || || | | | |||| Sbjct 3764353 GAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTTTCAGAACTGAAGATAAGATT 3764411 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGGA 245 || ||| || | | | ||| | ||||| ||||||||||||||||| Sbjct 3764412 AAGAGG---AGCTGCTAG----AACATTTATATTGTGCCACTAGAGGTGAAATTCTTGGG 3764464 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 | |||| || | | |||||| || ||||| |||||||||||||||| Sbjct 3764465 CCAGTGCAAGATGGACCAGCGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 3764519 >seq126 Length=9965562 Score = 96.9 bits (106), Expect = 6e-18 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| | || || || ||| | || ||||||||||||||| | |||||| Sbjct 7378540 ATGCTCTTAACTAAGCGTCCCATGGGGCCCAAAACGTTTACTTTGAAAAAACTGGAGTGT 7378599 Query 98 TCAAAGCAGGCCT---TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| ||||||| || |||||| ||| |||| ||| ||| ||||| |||| Sbjct 7378600 TCAAACCAGGCCTGAGCCGCCTGAATACTGCAGCTAGGAAAAATGGAAAAGGAC-CGCGG 7378658 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||||| |||||| | | | |||||||| ||| || | | | | | Sbjct 7378659 TTCTATTTTGCTGGTTTTCGAAATTGAGGCCATGATTAAGAGGAATGGCCAGCAATATTT 7378718 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || |||| ||||||||||| || || | || ||||| Sbjct 7378719 GTATTGCGCTGCTAGAGATGAAATTCTTGTCCCAGCGCAATTTGGACCAGAGCAAAAGCA 7378778 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 7378779 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 7378815 >seq18 Length=32156441 Score = 87.8 bits (96), Expect = 3e-15 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 |||||||||| || |||||||||||||||||||||| |||| |||| ||| Sbjct 6576412 TTTACTTTGACAATATTAGAGTGTTCAAAGCAGGCCCAAGCTGCTTAGATACCGCAGCTA 6576471 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || ||||| ||||||||| | |||||||||||||||| || | || | | ||||| Sbjct 6576472 GGCATAATGGAATAGGAC-CGTGGTTCTATTTTGTTGGATTTCGGAACTGAGGCCATGAT 6576530 Query 191 TAATAGGGATAGTCGGGGG 209 || ||||| || ||||| Sbjct 6576531 TATGAGGGACAGCAGGGGG 6576549 >seq5 Length=45607681 Score = 77.0 bits (84), Expect = 6e-12 Identities = 94/127 (74%), Gaps = 10/127 (8%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 |||||||||| ||| ||| |||||||||||||| || ||| |||| ||| Sbjct 14336336 TTTACTTTGAGAAA-TTACAGTGTTCAAAGCAGACCCAAGCT--------GTAGCTAGGA 14336286 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| || ||||| ||||||||| |||||||||| ||| || | | |||||||| Sbjct 14336285 ATAATGCAAAAGGAC-CACGGTTCTATGTTGTTGGTTTTTAGAACTGACACCATGATTAA 14336227 Query 194 TAGGGAT 200 |||||| Sbjct 14336226 GAGGGAT 14336220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915012384000