Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6 122 4e-25 seq44 113 2e-22 seq48 89.7 2e-15 seq90 87.8 7e-15 seq13 78.8 4e-12 seq343 77.0 1e-11 seq2772 75.2 5e-11 >seq6 Length=41040566 Score = 122 bits (134), Expect = 4e-25 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||| |||||| ||||||||||||||| |||| |||||||||||||||||||| Sbjct 21146221 GTTAGGACCTGAAAGAAGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 21146162 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| || || || ||| | |||||||| ||||| || ||||||||||||| Sbjct 21146161 TGGAGGTCCGTAGAAGTCCTGACATGCAAATCAGTCGTCCAACCTGGGTATAGGGGC 21146105 >seq44 Length=21806069 Score = 113 bits (124), Expect = 2e-22 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638 |||||||||||||||||| |||| |||||||||||||||||||||||||| || || Sbjct 18693056 GATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGT 18692997 Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| ||||||||| || || || ||||||||||||||| Sbjct 18692996 GGTCCTGATGTGCAAATCAGTCATCCAACCTGGGTATAGGGGCGA 18692952 >seq48 Length=20441919 Score = 89.7 bits (98), Expect = 2e-15 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||||| || |||| ||||||||||||||||| |||||||| | ||||||||| ||| Sbjct 19056920 TGTTGG-ACATGAAAAATGGTGAACTATGCCTGGGCAGGGTGAAACGAGAGGAAACGCTG 19056978 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677 ||||||| | ||| ||| ||| | |||||||| || || | | ||||||| Sbjct 19056979 GTGGAGGGCCACAGAGGTCCTGACTAGCAAATCGGTCATCCGACCTTGGTATAG 19057032 >seq90 Length=12282368 Score = 87.8 bits (96), Expect = 7e-15 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||| |||||||||||||||| ||| |||||||||||||| ||| Sbjct 6526452 TGTTAGGACCCGAAAGGTGGTGAACTATGCCTGGGCTGGGCGAAGCCAGAGGAAA--CTG 6526395 Query 624 GTGGAGG-CTCGCAGCGGTTCTGGCGT 649 ||||||| |||| || ||| ||| ||| Sbjct 6526394 GTGGAGGTCTCGTAGTGGTCCTGACGT 6526368 >seq13 Length=36266773 Score = 78.8 bits (86), Expect = 4e-12 Identities = 68/83 (82%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTG-GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | ||||| ||| || ||| |||||||||| ||| ||| ||| |||| Sbjct 27802546 GAGTATGAGCACACATGTTGAGGAACCTAAATATGGTGAACTGTGCTTGAGCAGGATGAA 27802487 Query 608 GCCAGAGGAAACTCTGGTGGAGG 630 ||||||| ||||| ||||||||| Sbjct 27802486 GCCAGAGAAAACTTTGGTGGAGG 27802464 >seq343 Length=2751252 Score = 77.0 bits (84), Expect = 1e-11 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 |||||||| |||||||||||| || |||||| ||| ||||||||||| ||| | | | Sbjct 2286726 CAGAGGAACCTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGACCCACCT 2286667 Query 670 GGGTATAGGGGC 681 |||||||||||| Sbjct 2286666 GGGTATAGGGGC 2286655 >seq2772 Length=11427 Score = 75.2 bits (82), Expect = 5e-11 Identities = 95/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||||||||||||| | || |||| | |||| | | ||||| || || Sbjct 11071 GAGTCGTTTTGCTTGGGAATGCAGCCCAAAGTGGGTGATAAACTCCATCTAAGTCTTGAT 11130 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | | || ||||| ||||||| ||| ||||| ||||||| |||||| | Sbjct 11131 ACTGTCACTAAACTGATAGTCAACAAGTATCTTGAGGGAAAGTTGAAAAGAACTTTGAAG 11190 Query 160 AGAGAGTTAAA 170 ||||| || || Sbjct 11191 AGAGAATTCAA 11201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079560275000