Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq6 122 4e-25
seq44 113 2e-22
seq48 89.7 2e-15
seq90 87.8 7e-15
seq13 78.8 4e-12
seq343 77.0 1e-11
seq2772 75.2 5e-11
>seq6
Length=41040566
Score = 122 bits (134), Expect = 4e-25
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624
||| ||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 21146221 GTTAGGACCTGAAAGAAGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGG 21146162
Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|||||| || || || ||| | |||||||| ||||| || |||||||||||||
Sbjct 21146161 TGGAGGTCCGTAGAAGTCCTGACATGCAAATCAGTCGTCCAACCTGGGTATAGGGGC 21146105
>seq44
Length=21806069
Score = 113 bits (124), Expect = 2e-22
Identities = 88/105 (84%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 579 GATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGC 638
|||||||||||||||||| |||| |||||||||||||||||||||||||| || ||
Sbjct 18693056 GATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGT 18692997
Query 639 GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| ||| ||||||||| || || || |||||||||||||||
Sbjct 18692996 GGTCCTGATGTGCAAATCAGTCATCCAACCTGGGTATAGGGGCGA 18692952
>seq48
Length=20441919
Score = 89.7 bits (98), Expect = 2e-15
Identities = 89/114 (78%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||||| || |||| ||||||||||||||||| |||||||| | ||||||||| |||
Sbjct 19056920 TGTTGG-ACATGAAAAATGGTGAACTATGCCTGGGCAGGGTGAAACGAGAGGAAACGCTG 19056978
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAG 677
||||||| | ||| ||| ||| | |||||||| || || | | |||||||
Sbjct 19056979 GTGGAGGGCCACAGAGGTCCTGACTAGCAAATCGGTCATCCGACCTTGGTATAG 19057032
>seq90
Length=12282368
Score = 87.8 bits (96), Expect = 7e-15
Identities = 73/87 (84%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||||||||| |||||||||||||||| ||| |||||||||||||| |||
Sbjct 6526452 TGTTAGGACCCGAAAGGTGGTGAACTATGCCTGGGCTGGGCGAAGCCAGAGGAAA--CTG 6526395
Query 624 GTGGAGG-CTCGCAGCGGTTCTGGCGT 649
||||||| |||| || ||| ||| |||
Sbjct 6526394 GTGGAGGTCTCGTAGTGGTCCTGACGT 6526368
>seq13
Length=36266773
Score = 78.8 bits (86), Expect = 4e-12
Identities = 68/83 (82%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 549 GAGTAAGAGCATAGCTGTTG-GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607
||||| ||||| | ||||| ||| || ||| |||||||||| ||| ||| ||| ||||
Sbjct 27802546 GAGTATGAGCACACATGTTGAGGAACCTAAATATGGTGAACTGTGCTTGAGCAGGATGAA 27802487
Query 608 GCCAGAGGAAACTCTGGTGGAGG 630
||||||| ||||| |||||||||
Sbjct 27802486 GCCAGAGAAAACTTTGGTGGAGG 27802464
>seq343
Length=2751252
Score = 77.0 bits (84), Expect = 1e-11
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669
|||||||| |||||||||||| || |||||| ||| ||||||||||| ||| | | |
Sbjct 2286726 CAGAGGAACCTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGACCCACCT 2286667
Query 670 GGGTATAGGGGC 681
||||||||||||
Sbjct 2286666 GGGTATAGGGGC 2286655
>seq2772
Length=11427
Score = 75.2 bits (82), Expect = 5e-11
Identities = 95/131 (73%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
|||||| ||| ||||||||||||| | || |||| | |||| | | ||||| || ||
Sbjct 11071 GAGTCGTTTTGCTTGGGAATGCAGCCCAAAGTGGGTGATAAACTCCATCTAAGTCTTGAT 11130
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || | | || ||||| ||||||| ||| ||||| ||||||| |||||| |
Sbjct 11131 ACTGTCACTAAACTGATAGTCAACAAGTATCTTGAGGGAAAGTTGAAAAGAACTTTGAAG 11190
Query 160 AGAGAGTTAAA 170
||||| || ||
Sbjct 11191 AGAGAATTCAA 11201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079560275000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |