Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq23 140 5e-31
seq339 129 9e-28
seq5 129 9e-28
seq205 125 1e-26
seq54 111 3e-22
seq193 98.7 2e-18
seq10 98.7 2e-18
seq4 98.7 2e-18
seq11 95.1 2e-17
seq60 93.3 7e-17
seq34 78.8 1e-12
>seq23
Length=27765713
Score = 140 bits (154), Expect = 5e-31
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 15795487 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATTGGAATTAACCAGACAAATCGCTCCACCA 15795428
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| || || |||||||||||||| |||| |||||||||||||||||||||
Sbjct 15795427 CCTAAGACCGACCGTGCACCACCACCCACGGAATAGAGAAAGAGCTATCAATCTGTC 15795371
>seq339
Length=2753576
Score = 129 bits (142), Expect = 9e-28
Identities = 82/89 (92%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230
|||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1073337 ATCGAGATTAACCAGACAAATCCCTCCACCAACTGAGAACGGCCATGCACCACCACCCAC 1073396
Query 231 AGAATCAAGAAAGAGCTATCAATCTGTCC 259
||||| ||||||||||||||||||||||
Sbjct 1073397 GGAATCGAGAAAGAGCTATCAATCTGTCC 1073425
>seq5
Length=45607681
Score = 129 bits (142), Expect = 9e-28
Identities = 156/207 (75%), Gaps = 13/207 (6%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||||||||| ||| ||| |||| | |||||||||||||||||||||||||||||| ||
Sbjct 1434443 GTCAGTGTAGTACGCATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 1434501
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA------GCCAGCC--ACCAA 126
||| ||| |||||| | ||| | |||| |||||||| | ||| |
Sbjct 1434502 CAA--TTCAGGTGGCTGCACCCCACT-GTCCTTCTAAGAAGTTGGGGGATGCCGAATGCT 1434558
Query 127 CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
| ||||| || ||| |||||| | | |||| ||||||||| |||||||||| ||
Sbjct 1434559 CGCGAGTCG-TGTAACTAGTTAGCATGCCAGAGTCTTGTTCGTTATGGGAATTAACCTGA 1434617
Query 187 CAAATCACTCCACCAACTAAGAACGGC 213
|||||||||| ||||||||||||| ||
Sbjct 1434618 CAAATCACTCTACCAACTAAGAACAGC 1434644
>seq205
Length=6054944
Score = 125 bits (138), Expect = 1e-26
Identities = 184/253 (73%), Gaps = 12/253 (5%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||| ||||| | | |||| | | | |||| ||| ||||||| |||||||||||||
Sbjct 3765020 GTCAATGTAGTGTGTGTGCTGTCTTGCACATTTAATGGCATCATGGACCTGTTATTGCT- 3764962
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
|| ||| | |||||| | ||| | |||||||||||||| || |||| |||| |
Sbjct 3764961 -AATCTTA-AGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTAGGGGACACCGACCACT 3764904
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
|| | | | ||| || || | | || | |||| ||| | |||||||||||||
Sbjct 3764903 AGGGGGTCTTGTAACTAGGTAACATGCCAGAGTTT-GTTCTTTACCAGAATTAACCAGAC 3764845
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| ||||| |||||||| |||||||||||||| ||| |||| |||||||| |
Sbjct 3764844 AAATCCCTCCAACAACTAAG-GGAGCCATGCACCACCATCCACGGAATGGAGAAAGAGTT 3764786
Query 248 ATCAATCTGTCCT 260
||||||| ||||
Sbjct 3764785 ATCAATCAATCCT 3764773
>seq54
Length=18522067
Score = 111 bits (122), Expect = 3e-22
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219
||| ||| ||| | |||||||| |||| |||||||| |||||| |||||| |||||| |
Sbjct 5659634 TCTTGTTTGTTTTTGGAATTAATCAGAGAAATCACTTCACCAATGAAGAACAGCCATGTA 5659693
Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||| |||| |||||||||||||||||||||
Sbjct 5659694 CCACCACCCAAGGAATGGAGAAAGAGCTATCAATCTGTC 5659732
>seq193
Length=6348819
Score = 98.7 bits (108), Expect = 2e-18
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230
||| || ||||||||||||||| ||||||||||||||||| | ||||||| |||| |||
Sbjct 2414988 ATCAGACTTAACCAGACAAATCGCTCCACCAACTAAGAACAGACATGCACTACCATCCAC 2415047
Query 231 AGAATCAAGAAAGAGCTATCAATCTGT 257
|||| |||||||||| | |||||||
Sbjct 2415048 GGAATTGAGAAAGAGCTTTAAATCTGT 2415074
>seq10
Length=39035891
Score = 98.7 bits (108), Expect = 2e-18
Identities = 85/104 (82%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215
|| ||||| || |||| | ||||||||||||||||| |||||||||||||||||| | |
Sbjct 38389163 AATGTCTCATTTGTTAACAGAATTAACCAGACAAATAACTCCACCAACTAAGAACAGTGA 38389104
Query 216 T-GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| | |||||||| || | | |||||||||||| || || ||||
Sbjct 38389103 TAGTACCACCACTCACAAAGTCAAGAAAGAGCAGTCTATTTGTC 38389060
>seq4
Length=47562486
Score = 98.7 bits (108), Expect = 2e-18
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|||||| |||||||||||||||||||||| |||| ||||| ||||| ||||||||||
Sbjct 11130560 CCAGACTAATCACTCCACCAACTAAGAACACCCATAAACCACTCCCCATGGAATCAAGAA 11130501
Query 242 AGAGCTATCAATCTGTC 258
|||||||||||| ||||
Sbjct 11130500 AGAGCTATCAATGTGTC 11130484
>seq11
Length=38255666
Score = 95.1 bits (104), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 13/221 (6%)
Strand=Plus/Minus
Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101
|||| ||||||||||||| || ||||||||| |||| || | |||||| | ||| |
Sbjct 11263917 ACATGTAAGGGCATCACAAACTTGTTATTGC-TCAATCT-CGGGTGGCTGAACACCACTT 11263860
Query 102 GTCCCTCTAAGAAGCCA------GCCACCAACCATAGTCGATGGGG---CTATTTAGCAG 152
||| |||| ||||| |||| || | | || | | | ||| |||||
Sbjct 11263859 GTCACTCTTAGAAGTTGTGAGATGCCAGCAGC--TTGTGGGTCCTGTAACTAGGTAGCAT 11263802
Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212
| || |||| |||| |||| || ||||||| || |||| ||||||| ||||||||||
Sbjct 11263801 GCTAGAGTCTTGTTCATTATTGGGATTAACCTGATAAATGGATCCACCATCTAAGAACGG 11263742
Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||| || |||| ||| ||| | ||| ||||||||||
Sbjct 11263741 CCATTTACTACCATCCACGAAATGGAAAAAAAGCTATCAAT 11263701
>seq60
Length=17543278
Score = 93.3 bits (102), Expect = 7e-17
Identities = 172/246 (70%), Gaps = 10/246 (4%)
Strand=Plus/Minus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
|||||||| ||| | |||| |||| | ||||||||||||| ||||||||||| | ||
Sbjct 919492 TCCGTCAGCATAGTGTATGTGCAGCCCTGCACATCTAAGGGCACCACAGACCTGTAACTG 919433
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC- 127
| ||| ||| | |||| | |||| | ||||||||||||| | ||| ||
Sbjct 919432 C-TCACTCTTGGGT-GGCTAAATGCCACTTATCCCTCTAAGAAGTTGGGGGGCACTGACT 919375
Query 128 -CATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184
| | | ||| || || ||| || | | | || |||| |||||||| |
Sbjct 919374 GCTTGGGGTCG-TGTAATTAATTAACACACCAGAATTTTACTCATTATTGGAATTAAGTA 919316
Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244
||||||||| || |||||||||||| | |||| || ||||| |||| ||| | ||||||
Sbjct 919315 GACAAATCATTCTACCAACTAAGAATGACCATTCATCACCAACCATGGAACCGAGAAAGC 919256
Query 245 GCTATC 250
|||||
Sbjct 919255 ACTATC 919250
>seq34
Length=23737259
Score = 78.8 bits (86), Expect = 1e-12
Identities = 89/118 (75%), Gaps = 5/118 (4%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | ||| ||| || | ||||||||||||||| || ||||||
Sbjct 21082828 CTAATTAGCATGCCAGAGTCCTGTTTCTTCTAGGAATTAACCAGACACATTGCTCCAC-- 21082771
Query 202 ACTAAGAACGGCCA-TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||| ||||| | |||||||||||| |||||||||| | ||||| ||||||
Sbjct 21082770 --TAAGAATGGCCAATATACCACCACCCATGGAATCAAGAAGTAATTATCAGTCTGTC 21082715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796641760500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |