Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq23 140 5e-31 seq339 129 9e-28 seq5 129 9e-28 seq205 125 1e-26 seq54 111 3e-22 seq193 98.7 2e-18 seq10 98.7 2e-18 seq4 98.7 2e-18 seq11 95.1 2e-17 seq60 93.3 7e-17 seq34 78.8 1e-12 >seq23 Length=27765713 Score = 140 bits (154), Expect = 5e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||| ||||||||||||||||||| |||||||| Sbjct 15795487 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATTGGAATTAACCAGACAAATCGCTCCACCA 15795428 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| || || |||||||||||||| |||| ||||||||||||||||||||| Sbjct 15795427 CCTAAGACCGACCGTGCACCACCACCCACGGAATAGAGAAAGAGCTATCAATCTGTC 15795371 >seq339 Length=2753576 Score = 129 bits (142), Expect = 9e-28 Identities = 82/89 (92%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1073337 ATCGAGATTAACCAGACAAATCCCTCCACCAACTGAGAACGGCCATGCACCACCACCCAC 1073396 Query 231 AGAATCAAGAAAGAGCTATCAATCTGTCC 259 ||||| |||||||||||||||||||||| Sbjct 1073397 GGAATCGAGAAAGAGCTATCAATCTGTCC 1073425 >seq5 Length=45607681 Score = 129 bits (142), Expect = 9e-28 Identities = 156/207 (75%), Gaps = 13/207 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| ||| ||| |||| | |||||||||||||||||||||||||||||| || Sbjct 1434443 GTCAGTGTAGTACGCATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CT 1434501 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA------GCCAGCC--ACCAA 126 ||| ||| |||||| | ||| | |||| |||||||| | ||| | Sbjct 1434502 CAA--TTCAGGTGGCTGCACCCCACT-GTCCTTCTAAGAAGTTGGGGGATGCCGAATGCT 1434558 Query 127 CCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | ||||| || ||| |||||| | | |||| ||||||||| |||||||||| || Sbjct 1434559 CGCGAGTCG-TGTAACTAGTTAGCATGCCAGAGTCTTGTTCGTTATGGGAATTAACCTGA 1434617 Query 187 CAAATCACTCCACCAACTAAGAACGGC 213 |||||||||| ||||||||||||| || Sbjct 1434618 CAAATCACTCTACCAACTAAGAACAGC 1434644 >seq205 Length=6054944 Score = 125 bits (138), Expect = 1e-26 Identities = 184/253 (73%), Gaps = 12/253 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||| ||||| | | |||| | | | |||| ||| ||||||| ||||||||||||| Sbjct 3765020 GTCAATGTAGTGTGTGTGCTGTCTTGCACATTTAATGGCATCATGGACCTGTTATTGCT- 3764962 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 || ||| | |||||| | ||| | |||||||||||||| || |||| |||| | Sbjct 3764961 -AATCTTA-AGTGGCTGAACACCACTTGTCCCTCTAAGAAGTTAGGGGACACCGACCACT 3764904 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | | | ||| || || | | || | |||| ||| | ||||||||||||| Sbjct 3764903 AGGGGGTCTTGTAACTAGGTAACATGCCAGAGTTT-GTTCTTTACCAGAATTAACCAGAC 3764845 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||| |||||||| |||||||||||||| ||| |||| |||||||| | Sbjct 3764844 AAATCCCTCCAACAACTAAG-GGAGCCATGCACCACCATCCACGGAATGGAGAAAGAGTT 3764786 Query 248 ATCAATCTGTCCT 260 ||||||| |||| Sbjct 3764785 ATCAATCAATCCT 3764773 >seq54 Length=18522067 Score = 111 bits (122), Expect = 3e-22 Identities = 84/99 (85%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| ||| ||| | |||||||| |||| |||||||| |||||| |||||| |||||| | Sbjct 5659634 TCTTGTTTGTTTTTGGAATTAATCAGAGAAATCACTTCACCAATGAAGAACAGCCATGTA 5659693 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| |||| ||||||||||||||||||||| Sbjct 5659694 CCACCACCCAAGGAATGGAGAAAGAGCTATCAATCTGTC 5659732 >seq193 Length=6348819 Score = 98.7 bits (108), Expect = 2e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171 ATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 ||| || ||||||||||||||| ||||||||||||||||| | ||||||| |||| ||| Sbjct 2414988 ATCAGACTTAACCAGACAAATCGCTCCACCAACTAAGAACAGACATGCACTACCATCCAC 2415047 Query 231 AGAATCAAGAAAGAGCTATCAATCTGT 257 |||| |||||||||| | ||||||| Sbjct 2415048 GGAATTGAGAAAGAGCTTTAAATCTGT 2415074 >seq10 Length=39035891 Score = 98.7 bits (108), Expect = 2e-18 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 || ||||| || |||| | ||||||||||||||||| |||||||||||||||||| | | Sbjct 38389163 AATGTCTCATTTGTTAACAGAATTAACCAGACAAATAACTCCACCAACTAAGAACAGTGA 38389104 Query 216 T-GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | | |||||||| || | | |||||||||||| || || |||| Sbjct 38389103 TAGTACCACCACTCACAAAGTCAAGAAAGAGCAGTCTATTTGTC 38389060 >seq4 Length=47562486 Score = 98.7 bits (108), Expect = 2e-18 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||| |||||||||||||||||||||| |||| ||||| ||||| |||||||||| Sbjct 11130560 CCAGACTAATCACTCCACCAACTAAGAACACCCATAAACCACTCCCCATGGAATCAAGAA 11130501 Query 242 AGAGCTATCAATCTGTC 258 |||||||||||| |||| Sbjct 11130500 AGAGCTATCAATGTGTC 11130484 >seq11 Length=38255666 Score = 95.1 bits (104), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 13/221 (6%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 |||| ||||||||||||| || ||||||||| |||| || | |||||| | ||| | Sbjct 11263917 ACATGTAAGGGCATCACAAACTTGTTATTGC-TCAATCT-CGGGTGGCTGAACACCACTT 11263860 Query 102 GTCCCTCTAAGAAGCCA------GCCACCAACCATAGTCGATGGGG---CTATTTAGCAG 152 ||| |||| ||||| |||| || | | || | | | ||| ||||| Sbjct 11263859 GTCACTCTTAGAAGTTGTGAGATGCCAGCAGC--TTGTGGGTCCTGTAACTAGGTAGCAT 11263802 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | || |||| |||| |||| || ||||||| || |||| ||||||| |||||||||| Sbjct 11263801 GCTAGAGTCTTGTTCATTATTGGGATTAACCTGATAAATGGATCCACCATCTAAGAACGG 11263742 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||| || |||| ||| ||| | ||| |||||||||| Sbjct 11263741 CCATTTACTACCATCCACGAAATGGAAAAAAAGCTATCAAT 11263701 >seq60 Length=17543278 Score = 93.3 bits (102), Expect = 7e-17 Identities = 172/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 |||||||| ||| | |||| |||| | ||||||||||||| ||||||||||| | || Sbjct 919492 TCCGTCAGCATAGTGTATGTGCAGCCCTGCACATCTAAGGGCACCACAGACCTGTAACTG 919433 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAAC- 127 | ||| ||| | |||| | |||| | ||||||||||||| | ||| || Sbjct 919432 C-TCACTCTTGGGT-GGCTAAATGCCACTTATCCCTCTAAGAAGTTGGGGGGCACTGACT 919375 Query 128 -CATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | | | ||| || || ||| || | | | || |||| |||||||| | Sbjct 919374 GCTTGGGGTCG-TGTAATTAATTAACACACCAGAATTTTACTCATTATTGGAATTAAGTA 919316 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||||| || |||||||||||| | |||| || ||||| |||| ||| | |||||| Sbjct 919315 GACAAATCATTCTACCAACTAAGAATGACCATTCATCACCAACCATGGAACCGAGAAAGC 919256 Query 245 GCTATC 250 ||||| Sbjct 919255 ACTATC 919250 >seq34 Length=23737259 Score = 78.8 bits (86), Expect = 1e-12 Identities = 89/118 (75%), Gaps = 5/118 (4%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||| ||| || | ||||||||||||||| || |||||| Sbjct 21082828 CTAATTAGCATGCCAGAGTCCTGTTTCTTCTAGGAATTAACCAGACACATTGCTCCAC-- 21082771 Query 202 ACTAAGAACGGCCA-TGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| ||||| | |||||||||||| |||||||||| | ||||| |||||| Sbjct 21082770 --TAAGAATGGCCAATATACCACCACCCATGGAATCAAGAAGTAATTATCAGTCTGTC 21082715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796641760500