Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq416 295 1e-77
seq217 181 2e-43
seq343 178 2e-42
seq6 168 1e-39
seq140 161 2e-37
seq58 93.3 7e-17
>seq416
Length=1524529
Score = 295 bits (326), Expect = 1e-77
Identities = 242/293 (83%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | |||||||| | | || |||||||||||| ||||||||||||||||
Sbjct 1161376 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGGAAAACTAACCTGTCTC 1161435
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 1161436 ACGACGGTCTAAAGCCAGCTCACGTTCACTATTAGTGGGTGAACAATCCAACACTTCGTG 1161495
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1161496 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGCCGCTA 1161555
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| | ||||||||||||| ||||||||||||||||||| | ||| ||
Sbjct 1161556 TGAACGCTTGGCCGTCACAAGCCAGTTAACCCTGTGGTAACTTTTCTGAAAACTCCTGCT 1161615
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
| ||| | || | |||||||| ||||| |||||| ||| | ||||
Sbjct 1161616 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCTGCTTTCACGGTCTATATT 1161668
>seq217
Length=5565991
Score = 181 bits (200), Expect = 2e-43
Identities = 124/140 (89%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 83 GTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142
|||| ||||||| | |||||||| |||| || |||||||||||| |||||||||
Sbjct 3395380 GTTCTCTATTAGAGAGTGAACAACCCAATATTTGGTGAATTCTGCTTCACAATGATAGGA 3395321
Query 143 AGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 3395320 AGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCC 3395261
Query 203 AGTTATCCCTGTGGTAACTT 222
||||||||||||||| ||||
Sbjct 3395260 AGTTATCCCTGTGGTCACTT 3395241
>seq343
Length=2751252
Score = 178 bits (196), Expect = 2e-42
Identities = 130/150 (87%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACG--GTCTAAACCCAGCTCACGTTCCC 88
||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||
Sbjct 2283122 TCATCAGTAGGGTAAAAGTAACCTGTCTCAAGACGAGGTCTAAACCCAGCTCACCTTCCC 2283181
Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148
|||||||||||||||||| ||| ||| |||||||||||| |||||||||| |||
Sbjct 2283182 TATTAGTGGGTGAACAATGCAATACTTGGTGAATTCTGCTTCACAATGATAGGAATAGCT 2283241
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||| ||||||||||||| || |||||
Sbjct 2283242 GACATCCAAGGATCAAAAAGTGACTTCGCT 2283271
>seq6
Length=41040566
Score = 168 bits (186), Expect = 1e-39
Identities = 134/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 16978411 TAGGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCC 16978352
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252
||||| | |||||||||||||| |||||||||||| |||||| || | ||| |
Sbjct 16978351 GCCACCAACCAGTTATCCCTGTTGTAACTTTTCTGACACCTCATGCTTAAAACCCAATAG 16978292
Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
| | |||||||| ||||| | |||||| ||| |||||||
Sbjct 16978291 GTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 16978251
>seq140
Length=9235476
Score = 161 bits (178), Expect = 2e-37
Identities = 137/169 (81%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182
|||||||| |||||||||||||| |||| ||||||| ||||||||| ||||||||||
Sbjct 4470960 TCTGCTTCACAGTGATAGGAAGAGCCAACATTGAAGGATTAAAAAGCAATGTCGCTATGA 4470901
Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242
|| |||| |||||| |||||||| |||||| |||||||||||||| |||||| || | |
Sbjct 4470900 ACACTTGACTGCCAAAAGCCAGTCATCCCTTTGGTAACTTTTCTGACACCTCCTGCTTAA 4470841
Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291
|| | || | |||||||| ||||| | |||||||||| |||||
Sbjct 4470840 AACCCAAAAGGTCAGAAGGATCGTGAGGCCTCGCTTTCATGGTCTGTAT 4470792
>seq58
Length=18876681
Score = 93.3 bits (102), Expect = 7e-17
Identities = 193/296 (65%), Gaps = 45/296 (15%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58
|||| ||| | |||||||| | | || ||| |||||||||||||||||||| | |
Sbjct 8669132 TACTGAGCAGGATTACCATAGCAACAACAAAATCACCAGTAGGGTAAAACTAACCTATTT 8669191
Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118
| | |||||| | | ||||||||||||||||| | |||||| |||||
Sbjct 8669192 CCCAAAAGTCTAACCTCTGCTCACGTTCCCTATTAATAGGTGAAAAATCC---------- 8669241
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||| || ||||||||| |||| || |
Sbjct 8669242 -AATTCT-----------------------------TAAAGATCAAAAAACAACATCATT 8669271
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
|||||| |||| ||||| || ||||||| |||||| |||||||| | | || |||
Sbjct 8669272 ATGAACTCTTG---GCCACCTGCTAGTTATCTTGGTGGTAGCTTTTCTGACTCTTCCAGC 8669328
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| |||| | || | |||||||| |||||| ||||||||| | | ||||||
Sbjct 8669329 TTAAAATCCAAAAGGTCAAAAGGATCATGAGGCCAAACTTTCATGATCTATATTCA 8669384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854224848000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |