Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq416 295 1e-77 seq217 181 2e-43 seq343 178 2e-42 seq6 168 1e-39 seq140 161 2e-37 seq58 93.3 7e-17 >seq416 Length=1524529 Score = 295 bits (326), Expect = 1e-77 Identities = 242/293 (83%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || |||||||||||| |||||||||||||||| Sbjct 1161376 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGGAAAACTAACCTGTCTC 1161435 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| | Sbjct 1161436 ACGACGGTCTAAAGCCAGCTCACGTTCACTATTAGTGGGTGAACAATCCAACACTTCGTG 1161495 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1161496 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGCCGCTA 1161555 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| | ||||||||||||| ||||||||||||||||||| | ||| || Sbjct 1161556 TGAACGCTTGGCCGTCACAAGCCAGTTAACCCTGTGGTAACTTTTCTGAAAACTCCTGCT 1161615 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | ||| | || | |||||||| ||||| |||||| ||| | |||| Sbjct 1161616 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCTGCTTTCACGGTCTATATT 1161668 >seq217 Length=5565991 Score = 181 bits (200), Expect = 2e-43 Identities = 124/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 83 GTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142 |||| ||||||| | |||||||| |||| || |||||||||||| ||||||||| Sbjct 3395380 GTTCTCTATTAGAGAGTGAACAACCCAATATTTGGTGAATTCTGCTTCACAATGATAGGA 3395321 Query 143 AGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC 202 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 3395320 AGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCC 3395261 Query 203 AGTTATCCCTGTGGTAACTT 222 ||||||||||||||| |||| Sbjct 3395260 AGTTATCCCTGTGGTCACTT 3395241 >seq343 Length=2751252 Score = 178 bits (196), Expect = 2e-42 Identities = 130/150 (87%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACG--GTCTAAACCCAGCTCACGTTCCC 88 ||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||| Sbjct 2283122 TCATCAGTAGGGTAAAAGTAACCTGTCTCAAGACGAGGTCTAAACCCAGCTCACCTTCCC 2283181 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 |||||||||||||||||| ||| ||| |||||||||||| |||||||||| ||| Sbjct 2283182 TATTAGTGGGTGAACAATGCAATACTTGGTGAATTCTGCTTCACAATGATAGGAATAGCT 2283241 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||| ||||||||||||| || ||||| Sbjct 2283242 GACATCCAAGGATCAAAAAGTGACTTCGCT 2283271 >seq6 Length=41040566 Score = 168 bits (186), Expect = 1e-39 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 16978411 TAGGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCC 16978352 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||| | |||||||||||||| |||||||||||| |||||| || | ||| | Sbjct 16978351 GCCACCAACCAGTTATCCCTGTTGTAACTTTTCTGACACCTCATGCTTAAAACCCAATAG 16978292 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 16978291 GTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 16978251 >seq140 Length=9235476 Score = 161 bits (178), Expect = 2e-37 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 |||||||| |||||||||||||| |||| ||||||| ||||||||| |||||||||| Sbjct 4470960 TCTGCTTCACAGTGATAGGAAGAGCCAACATTGAAGGATTAAAAAGCAATGTCGCTATGA 4470901 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 || |||| |||||| |||||||| |||||| |||||||||||||| |||||| || | | Sbjct 4470900 ACACTTGACTGCCAAAAGCCAGTCATCCCTTTGGTAACTTTTCTGACACCTCCTGCTTAA 4470841 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 || | || | |||||||| ||||| | |||||||||| ||||| Sbjct 4470840 AACCCAAAAGGTCAGAAGGATCGTGAGGCCTCGCTTTCATGGTCTGTAT 4470792 >seq58 Length=18876681 Score = 93.3 bits (102), Expect = 7e-17 Identities = 193/296 (65%), Gaps = 45/296 (15%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG--TCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | |||||||| | | || ||| |||||||||||||||||||| | | Sbjct 8669132 TACTGAGCAGGATTACCATAGCAACAACAAAATCACCAGTAGGGTAAAACTAACCTATTT 8669191 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 | | |||||| | | ||||||||||||||||| | |||||| ||||| Sbjct 8669192 CCCAAAAGTCTAACCTCTGCTCACGTTCCCTATTAATAGGTGAAAAATCC---------- 8669241 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||| || ||||||||| |||| || | Sbjct 8669242 -AATTCT-----------------------------TAAAGATCAAAAAACAACATCATT 8669271 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||| |||| ||||| || ||||||| |||||| |||||||| | | || ||| Sbjct 8669272 ATGAACTCTTG---GCCACCTGCTAGTTATCTTGGTGGTAGCTTTTCTGACTCTTCCAGC 8669328 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||| | || | |||||||| |||||| ||||||||| | | |||||| Sbjct 8669329 TTAAAATCCAAAAGGTCAAAAGGATCATGAGGCCAAACTTTCATGATCTATATTCA 8669384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854224848000