Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq113 185 3e-44 seq126 163 9e-38 seq205 154 4e-35 seq17 140 1e-30 seq34 129 2e-27 seq80 118 3e-24 seq172 104 7e-20 seq8 104 7e-20 seq64 95.1 4e-17 seq88 80.6 8e-13 >seq113 Length=11149966 Score = 185 bits (204), Expect = 3e-44 Identities = 151/182 (83%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| ||||||| ||||| |||| |||||||| Sbjct 10028981 ACTCATTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGTTATTTTTTGTTACTACCTC 10029040 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||| ||| ||||||||||||||| |||||||||||||||||||| |||| | ||| Sbjct 10029041 CCCGGGTCAGGAGTGGGTAATTTGCGCGACTGCTGCCTTCCTTGGATGTTGTAGACATTT 10029100 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 | ||||||||||||| ||| || |||||| ||||||| | |||| | ||||||||| Sbjct 10029101 CGCAGGCTCCCTCTCTGGACTCAAACCCTGATTCCCCATCACCCAAGGTCACCATGGTAA 10029160 Query 182 GC 183 || Sbjct 10029161 GC 10029162 >seq126 Length=9965562 Score = 163 bits (180), Expect = 9e-38 Identities = 116/132 (88%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 7378343 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 7378284 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| |||||||||||| ||||||||||||| ||| ||||||||||| |||| Sbjct 7378283 CCCGGGTCGGGAGTGGGTAATTTGCACGCCTGCTGCCTTTCTTTGATGTGGTAGCGGTTT 7378224 Query 122 CTCAGGCTCCCT 133 |||||||||||| Sbjct 7378223 CTCAGGCTCCCT 7378212 >seq205 Length=6054944 Score = 154 bits (170), Expect = 4e-35 Identities = 168/219 (77%), Gaps = 13/219 (6%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | | ||||||| ||||||| |||| || | ||||||| Sbjct 3763978 ACTCATTCCAATTACATGGTCTCAAAAGAATCCTGTAT---TATTACTTTCCGCTACCTC 3763922 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || ||| || |||||||||||| ||||||||||||||||||||||||||| | ||| Sbjct 3763921 CCAA-GTCATGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGTCATTT 3763863 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 |||||| ||||||| ||||| ||||||| ||| | | | |||| | | || ||||||| Sbjct 3763862 CTCAGGTGCCCTCTCTGGAATTGAACCCTGATTTCTCATCACCCATGGTCACAATGGTAG 3763803 Query 182 GCCACTAT----CCTACCATCGAAAGTTGATAGGGCAGA 216 ||| || | ||| ||||||||||||||||| Sbjct 3763802 ----ATATGGTGACTGCTATCAAAAGTTGATAGGGCAGA 3763768 Score = 80.6 bits (88), Expect = 8e-13 Identities = 86/109 (79%), Gaps = 6/109 (6%) Strand=Plus/Minus Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATAC 455 || |||| | ||||||||||||||| |||| |||||||||||||| | ||| || | Sbjct 3763314 AACAAACAACAACTGATTTAATGAGACATTTGCAGTTTCACTGTACTCCTGTGCGTAAA- 3763256 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| || || ||||||||| |||||||||| | || |||||||| Sbjct 3763255 -GAGACA--CAAGGGTTAATCTTTAAGACAAGCATGT-ACCACTGGCAG 3763211 >seq17 Length=32810362 Score = 140 bits (154), Expect = 1e-30 Identities = 133/166 (80%), Gaps = 7/166 (4%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAAC 403 ||||||||||||||||| ||||||| |||||||| | || | ||| || | |||| ||| Sbjct 3343487 CATGTATTAGCTCTAGAGTTACCACAGTTATCCAAGGAGAAGAGGAACCAGCAAACAAAG 3343546 Query 404 GA----TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTA 458 || |||||||||||||||||||||| |||||||| ||| || || | || || Sbjct 3343547 GAATCATAACTGATTTAATGAGCCATTCACAGTTTCAAGGTACCAGCCTGTGTGTAATTT 3343606 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||| |||||||| |||||||||| ||| |||||| Sbjct 3343607 GAGATGCATGGCTTCATCTTTGATGCAAGCATATG-CTATTGGCAG 3343651 Score = 100 bits (110), Expect = 9e-19 Identities = 119/157 (76%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| || |||| || | | || ||||| || |||||| ||| ||| |||||||| Sbjct 22854081 ACTGATGCCAAATAAATGGCCTCAAAAAAGTTCTGTATTGTTATC-ATT---ACTACCTC 22854026 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||| ||| ||||||||| | |||| |||| ||||| |||||| ||| | ||| Sbjct 22854025 CCCAGGTCAGGAGTGGGTAATTCTTGTACCTGTTGCCATCCTTTGATGTGCTAGTCATTT 22853966 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||||||||| ||| ||||| ||| || ||||||| Sbjct 22853965 CTCAGGCTCCCTTTCCAGAATC-AACTCTGATTCCCC 22853930 >seq34 Length=23737259 Score = 129 bits (142), Expect = 2e-27 Identities = 131/169 (78%), Gaps = 20/169 (12%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTAT----C 395 || |||||||| | | ||||||||||||| |||||||| |||| | ||| || | | Sbjct 925926 TTGGCATGTATCACCCCTAGAATTACCACAGTTATCCAAGTAGGACAGGAACAAGTGACC 925985 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 ||| ||| ||||||||||||||||||||||| ||||| ||||||| | ||| Sbjct 925986 AAAGGAACCATAACTGATTTAATGAGCCATTCACAGTTCCACTGTACCG---GCT----- 926037 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| |||||||||| Sbjct 926038 ------GTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 926079 >seq80 Length=13770986 Score = 118 bits (130), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 5/133 (4%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA---AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||| | || ||||||||| |||| ||||| | | ||||| Sbjct 1074107 ACTCATTCCAATTACAGGGCCTCGAGAAAGAGCCC-GTATTGTTATTTTTCATTACTACT 1074165 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| || ||||||| ||||||||||| || |||| |||||||||||||||||||||| || Sbjct 1074166 TCCACG-GTCGGGAGTGGGTAATTTGTGCACCTGTTGCCTTCCTTGGATGTGGTAGCTGT 1074224 Query 120 TTCTCAGGCTCCC 132 ||||| |||| || Sbjct 1074225 TTCTCTGGCTACC 1074237 >seq172 Length=7263250 Score = 104 bits (114), Expect = 7e-20 Identities = 80/90 (89%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 417 ATGAGCCATTCGCAGTTTCACTGTA-TAGAT-TGCTTATACTTAGACATGCATGGCTTAA 474 |||||||||| |||||||||||||| || | ||| ||||||||||||||||||||||| Sbjct 4952063 ATGAGCCATTTGCAGTTTCACTGTACCAGCTGTGC--ATACTTAGACATGCATGGCTTAA 4952120 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| || | |||||||||| Sbjct 4952121 TCTTTGAGACAAGCCTACG-CTACTGGCAG 4952149 >seq8 Length=38990876 Score = 104 bits (114), Expect = 7e-20 Identities = 127/169 (75%), Gaps = 16/169 (9%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAA---- 397 ||| |||| |||||||||||||||||| ||| || |||| | ||| | | ||| Sbjct 17279905 AGCGTGTACTAGCTCTAGAATTACCACAATTACACAAGTAGGAGAGGAGCAAGCAACCAT 17279964 Query 398 --ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 | |||| |||||||||||| ||| ||| | || | ||||| |||| | | Sbjct 17279965 AAAGAAACCATAACTGATTTAGTGACCCACTGT--GTGTACCTGTAG----TGCTCA--C 17280016 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||| | |||||||||||||||||||||||| |||||||||| Sbjct 17280017 TTAGACATGCAAGACTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 17280064 >seq64 Length=17089795 Score = 95.1 bits (104), Expect = 4e-17 Identities = 79/97 (81%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 || ||| |||||||||||| | |||||||| |||||||||||||||||| ||||||||| Sbjct 14543652 TCAGGAGTGGGTAATTTGCATGTCTGCTGCCCTCCTTGGATGTGGTAGCCATTTCTCAGG 14543711 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 || ||||||| ||||| | ||||||| | ||| Sbjct 14543712 CTTCCTCTCC-----AGAACCATGATTCCCCATCACC 14543743 >seq88 Length=13306769 Score = 80.6 bits (88), Expect = 8e-13 Identities = 121/169 (72%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA----AGGTACT-ATC 395 || ||||||||||| |||||||||| | ||||||||||||| | || || | | Sbjct 742521 TTGGCATGTATTAGTTCTAGAATTATCGTAGTTATCCATGTAGGAGGAGAGCAGCTGACC 742580 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 ||| |||| ||||||| ||||| || | || || ||||| | || | ||| Sbjct 742581 AAAGAAACCCTAACTGACTTAATTAGTCTTTAACA-TTTCATTTTACTTACCATAAATAT 742639 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| |||||| || ||| ||||||||||||| | ||| ||| Sbjct 742640 TTAGACATTGATGGCTCAACATTTTAGACAAGCATATGTCCCCTGTCAG 742688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510090368000