Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq3 154 1e-32
seq260 132 4e-26
seq140 111 1e-19
seq1663 109 4e-19
seq1 98.7 8e-16
>seq3
Length=52730029
Score = 154 bits (170), Expect = 1e-32
Identities = 423/640 (66%), Gaps = 15/640 (2%)
Strand=Plus/Minus
Query 61297 TGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTC 61356
|||||||| |||||||| || |||||||| || | || || || ||||| ||| | ||
Sbjct 13969207 TGTTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTT 13969148
Query 61357 ATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACG 61416
|| || || ||||| | || ||| | ||| | || |||||||| || | |
Sbjct 13969147 ATTGACACTTACATTAA--AGTCTAAGGACAGGGAATTTCTCTTTAATGCCATTGAAAGG 13969090
Query 61417 ATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--G 61474
|| || |||||| ||||||| ||||||||||| |||| | |||| | |
Sbjct 13969089 ATGCCTTGTGTGAAGAGGAAAGCAGATTGGGCCTTGGGCTGGACTGG--GGACAAAGAAG 13969032
Query 61475 CTACATTTGGTGAACGATTGCTGG--CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG 61532
|||||| ||| || || || ||| | ||||| | || || | | || | |||
Sbjct 13969031 CTACATATGGGGATCG--TGTTGGAGCCTTTGCAGCAGTGGAAAGAATCTTCTATTCTGG 13968974
Query 61533 ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAG 61592
|| ||||| |||| || ||| | || || | |||| ||||| |||||||| ||
Sbjct 13968973 TTCATTTGCATCAATATTCTGGCTCAATAAGTGAGGACCAATGCCTGGTCTGACATTTTC 13968914
Query 61593 CAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCA 61651
|||||| | || | || | || ||||| |||| ||||| ||||| | | ||||
Sbjct 13968913 CAATGACCTTATTAGCA-GAGATGAGGGTTTGCACTGTGACTTTGCCTGCCTAATGTTCA 13968855
Query 61652 AACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGG 61711
||| | ||| | | || |||||| || | || || || || | | || |
Sbjct 13968854 AACAC---CTGCTACACAAACCTTCGGAGCAGAGAGTAAAAGAAATAATTATTAATGCTG 13968798
Query 61712 TAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATT 61771
| | | ||| |||| ||||| ||||| || ||||| || | | ||||| |||||||
Sbjct 13968797 TTAGGCTAGAATAGGAGTTTCTTACTGAGGCCTTGCCTGTGAAATTTATCGGAATGAATT 13968738
Query 61772 GTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA 61831
| ||||| | ||| ||||||||||| || ||| | | || | || |||||
Sbjct 13968737 GCACTTTAATGAAGTGGTACATTGAATTTGTGGCAGACAGACCAATGCTGGAACTGGGTT 13968678
Query 61832 TGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATG 61891
| || ||| | || |||| |||||||| |||||||| | | ||| ||||| |
Sbjct 13968677 TTAATAAGATGTTCAAAGTAGAAAATCCATTTGACTTCATGGAGAATAATTCACTGGAAG 13968618
Query 61892 GCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
| |||| || || | |||||| | |||||||| |||||
Sbjct 13968617 GGCAGACTAACTTCTGTGAGAAAAGAGTAGGCGAATATCA 13968578
>seq260
Length=4071714
Score = 132 bits (146), Expect = 4e-26
Identities = 585/915 (64%), Gaps = 32/915 (3%)
Strand=Plus/Plus
Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084
||||||| | || ||| ||||||| ||| || || || || || || || || | |
Sbjct 1909147 ATGAACCATTGCTGAGAGAAAATCCTCTTCGCTTTGTCTTCTTTCCTATTGAATACCATG 1909206
Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144
|||||| | |||||||| || || || |||||||| || || ||||||||||| |||
Sbjct 1909207 ATATTTTTCAGATGTACAAGAAAGCTGAGGCTTCCTTTTGTACCGTGGAGGAGGTGGATC 1909266
Query 61145 TGTCCAAAGACATGAATGACTG-GGAGCGTTTATCGAG-CGGTGAACA-ACATTTCATTA 61201
| || || ||||| | |||| | ||| | || | | | ||| ||| |||||
Sbjct 1909267 TTTCTAAGGACATTCAGCACTGAGAAGCCCGGA---AGCCTGAGGACAGACACTTCATAT 1909323
Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261
| | || |||| |||||||| || || || || || ||||| || || |||| |
Sbjct 1909324 CATACGTACTGGCATTCTTTGCAGCAAATGATGGCATAGTGAATGAAAACTTGGTGGAGC 1909383
Query 61262 G-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320
| ||| || || || || || || | || || | |||||||| |||||||| ||| ||
Sbjct 1909384 GATTTAGC-CAAGAAGTTCATGTTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTTCC 1909442
Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380
|| || || | || || || ||||| ||| | || || || || ||||| | |
Sbjct 1909443 ATTGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGTTTCT 1909502
Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440
| || | ||| | || |||||||| | ||| | || || ||| ||| ||
Sbjct 1909503 AAGAAAAGGGAATTTCTCTTTAATGCCATTGGAACGCTGCCTTGTGTTAAGAAGAAGGCA 1909562
Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGG 61498
||||||||||| ||||| | |||| | ||||| || || || | | |
Sbjct 1909563 GATTGGGCCTTGCGCTGGAT--TGGGGACAAAGAAGCTACCCATGCGGAGCGTGTTGTAG 1909620
Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558
| ||||| | | || || | || || | | || ||||| |||| | ||| | |
Sbjct 1909621 CCTTTGCAGCAATGGAAGGAATTTTCTTTTCTAGTTCTTTTGCATCAATATCCTGGCTCA 1909680
Query 61559 AGAAA-CGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGA 61616
| ||| || ||||| ||||| |||||||| || ||||| | || || || | || ||
Sbjct 1909681 AAAAAGCGAGGACTAATGCCTGGTCTGACATTTCCCAATGAACTTATTAGCA-GAGATGA 1909739
Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676
||| |||| |||| | ||| | | | |||||| |||||| | | || ||
Sbjct 1909740 GGGTTTGCACTGTGGCTATGCCTGTCTAATGTTCAAA---TATCTGCTACACAAACCTTC 1909796
Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736
|||| || | || || || | | | || | || ||| |||| || || ||
Sbjct 1909797 GGAGCAGAGAGTTAAATCAATAATTACTAATTCTGTTAGGATAGAATAGGAGTTCCTTAC 1909856
Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796
|| || ||||| || || ||| | || ||||| |||| || ||| |||
Sbjct 1909857 AGAGGCATTGCCTGTGAAGCTTATCAGAATTAATTGCACTTTAATTAAGCGGTACATT-- 1909914
Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856
| | || || | || |||||| | || ||| | || ||||
Sbjct 1909915 ------------CAGACTAATGCTGGAATTGGGTTTTAATAAGATGTTCAAAGTAGAAAA 1909962
Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916
|||||||| |||||||| | ||||| ||||| || ||||| || || || ||||| |
Sbjct 1909963 TCCATTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAG 1910022
Query 61917 TGTAGGCGACTATCA 61931
|||||| |||||
Sbjct 1910023 AGTAGGCAGATATCA 1910037
>seq140
Length=9235476
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| || || |||| ||||| ||
Sbjct 5949794 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 5949853
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| ||
Sbjct 5949854 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 5949913
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 5949914 AGACTCAATGATGGCATACCAAAG 5949937
Score = 87.8 bits (96), Expect = 1e-12
Identities = 117/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754
||| || || |||| ||| |||| || | ||| || |||||||||| || ||||| |
Sbjct 5941845 CTCTTTAGCCAGTTCACAACTGGCTTCCAATGCTCCATAATAAATGGTTTCAAAAATTTG 5941904
Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813
|| ||| | || || |||||| | || ||||| |||||||| ||||| |
Sbjct 5941905 CTTGTTCAGTAACTGGGCTTCTGGGCTCTCAAAAGG-ATACCTCATCAGGATAAAAGCAT 5941963
Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853
| ||||||||||| || ||||| || ||||||||||||||
Sbjct 5941964 CTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGACG 5942003
>seq1663
Length=17039
Score = 109 bits (120), Expect = 4e-19
Identities = 477/744 (64%), Gaps = 28/744 (4%)
Strand=Plus/Plus
Query 61193 ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT 61252
||||||| |||||| |||||||||| || || || | || || ||||| || |
Sbjct 2460 ATTTCATATCACATGTACTGGCGTTCTTAGCGGCAAGTGATGCCATAGTAAATGAAAAGT 2519
Query 61253 TATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311
| |||| || ||| || || | || ||| | | || | || |||||||| ||||||
Sbjct 2520 TGGTGGAGCGATTTAGC-CAAAAAGTCCAAATTACAGAACC-CGCTGTTTCTATGGCTTC 2577
Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371
|| ||||||||||| || | || || || ||||| ||| | || || || || |||||
Sbjct 2578 CAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATT 2637
Query 61372 AGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAG 61431
| || |||| | ||| | || |||||||| | | ||| || ||||||
Sbjct 2638 AAAGATTCTAAGGAAAGGGAATTTCTCTTTAATGCCATTTAAAAGATTCCTTGTGTGAAG 2697
Query 61432 CGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAAC 61489
||| || ||||||||||| || || | | |||| | ||||| | ||
Sbjct 2698 AAGAAGGCAGATTGGGCCTTGTGCTGAATTA--GGGACAAAGAAGCTACCTATG------ 2749
Query 61490 GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549
| ||||| | || || || | | || ||| || ||||| || |
Sbjct 2750 -------TACCTTTGCAGCAGTGGAAGGAATCGTCTTTTCTGGTTCTTTTGCATCAGTAA 2802
Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCA 61608
| ||| | |||| | ||||| ||||| |||||||| || ||||| | || || ||
Sbjct 2803 TCTGGCTTGAGAAGCCAGGACTAATGCCTGGTCTGACATTTTCCAATGAACTTATTAGCA 2862
Query 61609 CGCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAA 61667
| || ||||| |||| ||||| |||| |||| | | ||||||| | ||| | |
Sbjct 2863 -GAGATGAGGGTTTGCACTGTGACTTTGCCTGTCTAAC-GTTCAAAC---ACCTGCTACA 2917
Query 61668 TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGA 61727
|| |||||| || | || || || || | | || || || ||||| ||
Sbjct 2918 CAAACCTTCGGAGCAGAGAGTAAAAGAAATAATTATTAATGCTGTTGGGATAGAACA-GA 2976
Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787
| |||| || || ||||| || | ||||| |||||||| ||||| ||
Sbjct 2977 AGTTCTTTACGAGGCCTTGCCTGTGAAGCATATCGGAATGAATTGCACTTTAATGAAGCG 3036
Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAA 61847
||| |||||||| || || ||| | | || | || ||||| | || ||| | |||
Sbjct 3037 GTACATTGAATTCGTGGCAGACAGAGTAATGCTGGAACTGGGTTTTAATAAGATGTTTAA 3096
Query 61848 TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907
|||| |||||||| |||||||| | |||| ||| | || ||||| || || |
Sbjct 3097 AGTAGAAAATCCATTTGACTTCATGGAGAATGTTTCACTGAAAGGGAAGACTAACTTCTG 3156
Query 61908 CGAGAAACGTGTAGGCGACTATCA 61931
|||| | |||||| |||||
Sbjct 3157 TGAGACGAGAACAGGCGAATATCA 3180
>seq1
Length=63721086
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
|||||||| || || | ||||| || ||||| ||||||||||| ||| ||| |||||
Sbjct 1758482 CAGGAGGTACAGGTCCCAGAGGCTCGCTGTTTTTACGGCTTCCAAATTCTCATCGAGAAC 1758423
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || ||||| |||||||| ||
Sbjct 1758422 GTTCACTCAGAGATGTACAGTTTGCTAATAGATACTTACATCAGAGA 1758376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397468670120000
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