Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 154 1e-32 seq260 132 4e-26 seq140 111 1e-19 seq1663 109 4e-19 seq1 98.7 8e-16 >seq3 Length=52730029 Score = 154 bits (170), Expect = 1e-32 Identities = 423/640 (66%), Gaps = 15/640 (2%) Strand=Plus/Minus Query 61297 TGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTC 61356 |||||||| |||||||| || |||||||| || | || || || ||||| ||| | || Sbjct 13969207 TGTTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTT 13969148 Query 61357 ATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACG 61416 || || || ||||| | || ||| | ||| | || |||||||| || | | Sbjct 13969147 ATTGACACTTACATTAA--AGTCTAAGGACAGGGAATTTCTCTTTAATGCCATTGAAAGG 13969090 Query 61417 ATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--G 61474 || || |||||| ||||||| ||||||||||| |||| | |||| | | Sbjct 13969089 ATGCCTTGTGTGAAGAGGAAAGCAGATTGGGCCTTGGGCTGGACTGG--GGACAAAGAAG 13969032 Query 61475 CTACATTTGGTGAACGATTGCTGG--CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG 61532 |||||| ||| || || || ||| | ||||| | || || | | || | ||| Sbjct 13969031 CTACATATGGGGATCG--TGTTGGAGCCTTTGCAGCAGTGGAAAGAATCTTCTATTCTGG 13968974 Query 61533 ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAG 61592 || ||||| |||| || ||| | || || | |||| ||||| |||||||| || Sbjct 13968973 TTCATTTGCATCAATATTCTGGCTCAATAAGTGAGGACCAATGCCTGGTCTGACATTTTC 13968914 Query 61593 CAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCA 61651 |||||| | || | || | || ||||| |||| ||||| ||||| | | |||| Sbjct 13968913 CAATGACCTTATTAGCA-GAGATGAGGGTTTGCACTGTGACTTTGCCTGCCTAATGTTCA 13968855 Query 61652 AACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGG 61711 ||| | ||| | | || |||||| || | || || || || | | || | Sbjct 13968854 AACAC---CTGCTACACAAACCTTCGGAGCAGAGAGTAAAAGAAATAATTATTAATGCTG 13968798 Query 61712 TAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATT 61771 | | | ||| |||| ||||| ||||| || ||||| || | | ||||| ||||||| Sbjct 13968797 TTAGGCTAGAATAGGAGTTTCTTACTGAGGCCTTGCCTGTGAAATTTATCGGAATGAATT 13968738 Query 61772 GTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA 61831 | ||||| | ||| ||||||||||| || ||| | | || | || ||||| Sbjct 13968737 GCACTTTAATGAAGTGGTACATTGAATTTGTGGCAGACAGACCAATGCTGGAACTGGGTT 13968678 Query 61832 TGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATG 61891 | || ||| | || |||| |||||||| |||||||| | | ||| ||||| | Sbjct 13968677 TTAATAAGATGTTCAAAGTAGAAAATCCATTTGACTTCATGGAGAATAATTCACTGGAAG 13968618 Query 61892 GCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | |||| || || | |||||| | |||||||| ||||| Sbjct 13968617 GGCAGACTAACTTCTGTGAGAAAAGAGTAGGCGAATATCA 13968578 >seq260 Length=4071714 Score = 132 bits (146), Expect = 4e-26 Identities = 585/915 (64%), Gaps = 32/915 (3%) Strand=Plus/Plus Query 61025 ATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGG 61084 ||||||| | || ||| ||||||| ||| || || || || || || || || | | Sbjct 1909147 ATGAACCATTGCTGAGAGAAAATCCTCTTCGCTTTGTCTTCTTTCCTATTGAATACCATG 1909206 Query 61085 ATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATT 61144 |||||| | |||||||| || || || |||||||| || || ||||||||||| ||| Sbjct 1909207 ATATTTTTCAGATGTACAAGAAAGCTGAGGCTTCCTTTTGTACCGTGGAGGAGGTGGATC 1909266 Query 61145 TGTCCAAAGACATGAATGACTG-GGAGCGTTTATCGAG-CGGTGAACA-ACATTTCATTA 61201 | || || ||||| | |||| | ||| | || | | | ||| ||| ||||| Sbjct 1909267 TTTCTAAGGACATTCAGCACTGAGAAGCCCGGA---AGCCTGAGGACAGACACTTCATAT 1909323 Query 61202 AACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAAC 61261 | | || |||| |||||||| || || || || || ||||| || || |||| | Sbjct 1909324 CATACGTACTGGCATTCTTTGCAGCAAATGATGGCATAGTGAATGAAAACTTGGTGGAGC 1909383 Query 61262 G-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 | ||| || || || || || || | || || | |||||||| |||||||| ||| || Sbjct 1909384 GATTTAGC-CAAGAAGTTCATGTTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTTCC 1909442 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 || || || | || || || ||||| ||| | || || || || ||||| | | Sbjct 1909443 ATTGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGTTTCT 1909502 Query 61381 GCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCG 61440 | || | ||| | || |||||||| | ||| | || || ||| ||| || Sbjct 1909503 AAGAAAAGGGAATTTCTCTTTAATGCCATTGGAACGCTGCCTTGTGTTAAGAAGAAGGCA 1909562 Query 61441 GATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGG 61498 ||||||||||| ||||| | |||| | ||||| || || || | | | Sbjct 1909563 GATTGGGCCTTGCGCTGGAT--TGGGGACAAAGAAGCTACCCATGCGGAGCGTGTTGTAG 1909620 Query 61499 CATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGA 61558 | ||||| | | || || | || || | | || ||||| |||| | ||| | | Sbjct 1909621 CCTTTGCAGCAATGGAAGGAATTTTCTTTTCTAGTTCTTTTGCATCAATATCCTGGCTCA 1909680 Query 61559 AGAAA-CGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCACGCGACGA 61616 | ||| || ||||| ||||| |||||||| || ||||| | || || || | || || Sbjct 1909681 AAAAAGCGAGGACTAATGCCTGGTCTGACATTTCCCAATGAACTTATTAGCA-GAGATGA 1909739 Query 61617 GGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTC 61676 ||| |||| |||| | ||| | | | |||||| |||||| | | || || Sbjct 1909740 GGGTTTGCACTGTGGCTATGCCTGTCTAATGTTCAAA---TATCTGCTACACAAACCTTC 1909796 Query 61677 GGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGAC 61736 |||| || | || || || | | | || | || ||| |||| || || || Sbjct 1909797 GGAGCAGAGAGTTAAATCAATAATTACTAATTCTGTTAGGATAGAATAGGAGTTCCTTAC 1909856 Query 61737 TGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 || || ||||| || || ||| | || ||||| |||| || ||| ||| Sbjct 1909857 AGAGGCATTGCCTGTGAAGCTTATCAGAATTAATTGCACTTTAATTAAGCGGTACATT-- 1909914 Query 61797 ATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAA 61856 | | || || | || |||||| | || ||| | || |||| Sbjct 1909915 ------------CAGACTAATGCTGGAATTGGGTTTTAATAAGATGTTCAAAGTAGAAAA 1909962 Query 61857 CCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACG 61916 |||||||| |||||||| | ||||| ||||| || ||||| || || || ||||| | Sbjct 1909963 TCCATTTGACTTCATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTTGAGAAGAG 1910022 Query 61917 TGTAGGCGACTATCA 61931 |||||| ||||| Sbjct 1910023 AGTAGGCAGATATCA 1910037 >seq140 Length=9235476 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 5949794 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 5949853 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 5949854 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 5949913 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 5949914 AGACTCAATGATGGCATACCAAAG 5949937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 ||| || || |||| ||| |||| || | ||| || |||||||||| || ||||| | Sbjct 5941845 CTCTTTAGCCAGTTCACAACTGGCTTCCAATGCTCCATAATAAATGGTTTCAAAAATTTG 5941904 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813 || ||| | || || |||||| | || ||||| |||||||| ||||| | Sbjct 5941905 CTTGTTCAGTAACTGGGCTTCTGGGCTCTCAAAAGG-ATACCTCATCAGGATAAAAGCAT 5941963 Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||||||||||| || ||||| || |||||||||||||| Sbjct 5941964 CTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGACG 5942003 >seq1663 Length=17039 Score = 109 bits (120), Expect = 4e-19 Identities = 477/744 (64%), Gaps = 28/744 (4%) Strand=Plus/Plus Query 61193 ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT 61252 ||||||| |||||| |||||||||| || || || | || || ||||| || | Sbjct 2460 ATTTCATATCACATGTACTGGCGTTCTTAGCGGCAAGTGATGCCATAGTAAATGAAAAGT 2519 Query 61253 TATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | |||| || ||| || || | || ||| | | || | || |||||||| |||||| Sbjct 2520 TGGTGGAGCGATTTAGC-CAAAAAGTCCAAATTACAGAACC-CGCTGTTTCTATGGCTTC 2577 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || ||||||||||| || | || || || ||||| ||| | || || || || ||||| Sbjct 2578 CAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATT 2637 Query 61372 AGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAG 61431 | || |||| | ||| | || |||||||| | | ||| || |||||| Sbjct 2638 AAAGATTCTAAGGAAAGGGAATTTCTCTTTAATGCCATTTAAAAGATTCCTTGTGTGAAG 2697 Query 61432 CGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAAC 61489 ||| || ||||||||||| || || | | |||| | ||||| | || Sbjct 2698 AAGAAGGCAGATTGGGCCTTGTGCTGAATTA--GGGACAAAGAAGCTACCTATG------ 2749 Query 61490 GATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCT 61549 | ||||| | || || || | | || ||| || ||||| || | Sbjct 2750 -------TACCTTTGCAGCAGTGGAAGGAATCGTCTTTTCTGGTTCTTTTGCATCAGTAA 2802 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG-AGTTGATATCA 61608 | ||| | |||| | ||||| ||||| |||||||| || ||||| | || || || Sbjct 2803 TCTGGCTTGAGAAGCCAGGACTAATGCCTGGTCTGACATTTTCCAATGAACTTATTAGCA 2862 Query 61609 CGCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAA 61667 | || ||||| |||| ||||| |||| |||| | | ||||||| | ||| | | Sbjct 2863 -GAGATGAGGGTTTGCACTGTGACTTTGCCTGTCTAAC-GTTCAAAC---ACCTGCTACA 2917 Query 61668 TCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGA 61727 || |||||| || | || || || || | | || || || ||||| || Sbjct 2918 CAAACCTTCGGAGCAGAGAGTAAAAGAAATAATTATTAATGCTGTTGGGATAGAACA-GA 2976 Query 61728 ATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCA 61787 | |||| || || ||||| || | ||||| |||||||| ||||| || Sbjct 2977 AGTTCTTTACGAGGCCTTGCCTGTGAAGCATATCGGAATGAATTGCACTTTAATGAAGCG 3036 Query 61788 GTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAA 61847 ||| |||||||| || || ||| | | || | || ||||| | || ||| | ||| Sbjct 3037 GTACATTGAATTCGTGGCAGACAGAGTAATGCTGGAACTGGGTTTTAATAAGATGTTTAA 3096 Query 61848 TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 |||| |||||||| |||||||| | |||| ||| | || ||||| || || | Sbjct 3097 AGTAGAAAATCCATTTGACTTCATGGAGAATGTTTCACTGAAAGGGAAGACTAACTTCTG 3156 Query 61908 CGAGAAACGTGTAGGCGACTATCA 61931 |||| | |||||| ||||| Sbjct 3157 TGAGACGAGAACAGGCGAATATCA 3180 >seq1 Length=63721086 Score = 98.7 bits (108), Expect = 8e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || | ||||| || ||||| ||||||||||| ||| ||| ||||| Sbjct 1758482 CAGGAGGTACAGGTCCCAGAGGCTCGCTGTTTTTACGGCTTCCAAATTCTCATCGAGAAC 1758423 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || ||||| |||||||| || Sbjct 1758422 GTTCACTCAGAGATGTACAGTTTGCTAATAGATACTTACATCAGAGA 1758376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397468670120000