Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq6128 208 1e-51 seq2498 152 1e-34 >seq6128 Length=1461 Score = 208 bits (230), Expect = 1e-51 Identities = 245/325 (75%), Gaps = 6/325 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| ||| | ||||||||| || ||||| || | | | Sbjct 368 AGGGGAGTGAAAAAGAACCTGAAACCGTGTGCCTACAAGAAGTTCGAGCCC-GTTAATGG 426 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||| |||||||||||| | ||||| || ||||||| | | || ||||||||||| Sbjct 427 GTGAGAGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA-TGTTTACGTGCGAGGTTAAGT 485 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCG 189 | || || |||||||| |||| |||| || || ||||||| | ||| | || Sbjct 486 --TGAAGAGACGG-AGCCGAAGGGAAACCGAGTCTGAATAGGGCGAAGTAGTACGAGGAC 542 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| ||||| ||||||| ||||||||||||| ||||||| || || Sbjct 543 ATAGACCCGAAACCATGTGACCTACCCATGAGCAGGTTGAAGGTGCGGTAAGACGCACTG 602 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||||||||||| | |||||||||||| | |||||||| | |||||| || |||| Sbjct 603 GAGGACCGAACCAGGGCACGTTGAAAAGTGCTTGGATGACTTGTGGGTAGCGGAGAAATT 662 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 |||| | |||| ||| |||||| || Sbjct 663 CCAAACGAACTTGGAGATAGCTGGT 687 >seq2498 Length=5872 Score = 152 bits (168), Expect = 1e-34 Identities = 229/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| || || |||| | || |||||| | | ||| | Sbjct 2943 AGGGGAGTGAAACAGAACCTGAAACCTGATGCATACATACAGTGGGAGCCCATTAATTGG 3002 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | |||| ||| ||| ||| || |||| Sbjct 3003 GTGACTGCGTACCTTTTGTATAATGGGTCAACGACTTACAT-TCAGTAGCAAGCTTAACC 3061 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || || || |||| |||| ||||| |||||| ||||| ||| Sbjct 3062 GAGTAGGGG-----AGGCGCAGGGAAACCGAGTCTTAATAGGGCGTTCAGTTGCTGGGTG 3116 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| ||||||| || ||| Sbjct 3117 TAGACCCGAAACCGAGTGATCTATCCATGGTCAGGATGAAGGTGCGGTAAAACGCACTGG 3176 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| | |||| ||| | |||||| | || |||||||||||||| Sbjct 3177 AGGTCCGAACCCACGCATGTTGCAAAATGCGGGGATGAACTGTGGATAGGGGTGAAAGGC 3236 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| ||| |||||| || Sbjct 3237 TAAACAAACTCGGAGATAGCTGGT 3260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972714704896