Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq121 132 7e-29
seq43 123 4e-26
seq263 118 2e-24
seq5 109 8e-22
seq45 95.1 2e-17
seq61 93.3 6e-17
seq252 87.8 3e-15
>seq121
Length=10290576
Score = 132 bits (146), Expect = 7e-29
Identities = 159/211 (75%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 24 AACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCA 83
||||| ||||| ||||| ||| |||||| |||||| ||| ||| | | || |||||||
Sbjct 9817340 AACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-CCTTGTTCATGGGGAATAATTGCA 9817283
Query 84 ATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTG 142
|| | ||||||||||||| ||||| | ||||||| |||| |||| |||
Sbjct 9817282 ATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGT 9817223
Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202
| || || ||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 9817222 AGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCAGACATCTAAGGGCATCA 9817163
Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||||||||||||| ||||| || |||||
Sbjct 9817162 CAGACCTGTTATTG-CTCAATCTCGGGTGGC 9817133
>seq43
Length=20637118
Score = 123 bits (136), Expect = 4e-26
Identities = 143/189 (76%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 46 CTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105
|||||| |||||| ||||||| | | || ||||||||| | |||||||||||||
Sbjct 20627281 CTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCTCCGATCCCCATCACGAAT 20627223
Query 106 AAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164
||||| | ||||||| |||| |||| ||| | || || ||| ||||
Sbjct 20627222 GGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAG 20627163
Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224
|||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| |
Sbjct 20627162 TGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC 20627104
Query 225 TTCCGTGGC 233
| |||||
Sbjct 20627103 TCGGGTGGC 20627095
>seq263
Length=3790467
Score = 118 bits (130), Expect = 2e-24
Identities = 139/184 (76%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| |||
Sbjct 2875276 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 2875219
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119
|||||| | | || ||||||||| | |||||||||||| ||| || | | ||
Sbjct 2875218 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 2875159
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||| |||| ||| | || || ||| ||||||||||||||||||
Sbjct 2875158 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 2875099
Query 180 GCCC 183
||||
Sbjct 2875098 GCCC 2875095
>seq5
Length=38686854
Score = 109 bits (120), Expect = 8e-22
Identities = 132/177 (75%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117
||||||||| | | || |||||||| ||||||||||||||| ||||| |
Sbjct 22676966 TTCCTCGTTCATGGGGAATAATTGCAACCCCCTATCCCCATCACGAATGGGGTTCAATGG 22677025
Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176
||||||| |||| | || ||| | || || |||| | ||||||||||||||
Sbjct 22677026 GTTACCCGCGCCTGCCAGCATAGGGTAGGCACACGCTGAACCAGTTAGTGTAGCGCGCGT 22677085
Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|| |||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 22677086 GCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 22677141
>seq45
Length=19174779
Score = 95.1 bits (104), Expect = 2e-17
Identities = 142/198 (72%), Gaps = 3/198 (2%)
Strand=Plus/Minus
Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96
|||| | | |||||| |||||| ||||||| | | ||| ||||||||| || |||
Sbjct 11319865 TGACCCACACTTACTGGGAATT-CCTCGTTCATGGGCAATAATTGCAATTCCTGATTCCC 11319807
Query 97 ATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGA 155
||||||| ||||| || |||||| ||||| | | ||| | | || || |||
Sbjct 11319806 ATCACGAATGGGGTTCAACGACTTACCCACACCTGACAGTGTAGGGTAGACACACGCTGA 11319747
Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215
|||||||| || | ||| |||| ||||||||||||||||||| |||||||||
Sbjct 11319746 GCCAGTCAGTGTAACGTACATGCAGCCCCAGACATCTAAGGGCATCACAGTCCTGTTATT 11319687
Query 216 GCCTCAAACTTCCGTGGC 233
| ||||| || |||||
Sbjct 11319686 G-CTCAATCTCGGGTGGC 11319670
>seq61
Length=17507673
Score = 93.3 bits (102), Expect = 6e-17
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
Sbjct 11222142 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCC-C 11222200
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 11222201 AATCTCAGGTGGC 11222213
>seq252
Length=4103016
Score = 87.8 bits (96), Expect = 3e-15
Identities = 166/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | | ||| ||||| || |||||| |||||| |
Sbjct 3220698 GTACAAAGGGCAGGGACTTAATCAACACAACCTT-ATGACCTGCACTTACT-GGAATT-C 3220642
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || | | || ||||| | | || || ||||| | || ||||| || ||
Sbjct 3220641 CTCATTCATGGGGAATAATTGTAGTCCCTGATTCC-ATCACAAATAAGATTCAACGAGTT 3220583
Query 120 ACCCGGACCTG-TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||| | ||||| | || | ||| | || | || | ||||||||| | || |||
Sbjct 3220582 ACCTGCACCTGCTAGGATAGGGTTAAGCACATGCCGAGCAAGTCAGTGTAGTGAGCCTGC 3220523
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| ||||||| ||||||||||||| |||||| ||||| || |||||
Sbjct 3220522 AGCCCCAGGCATCTAAAGGCATCACAGACCATTTATTG-CTCAATCTCTGGTGGC 3220469
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751936125120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |