Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq121 132 7e-29 seq43 123 4e-26 seq263 118 2e-24 seq5 109 8e-22 seq45 95.1 2e-17 seq61 93.3 6e-17 seq252 87.8 3e-15 >seq121 Length=10290576 Score = 132 bits (146), Expect = 7e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 24 AACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCA 83 ||||| ||||| ||||| ||| |||||| |||||| ||| ||| | | || ||||||| Sbjct 9817340 AACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-CCTTGTTCATGGGGAATAATTGCA 9817283 Query 84 ATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTG 142 || | ||||||||||||| ||||| | ||||||| |||| |||| ||| Sbjct 9817282 ATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGT 9817223 Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 | || || ||| |||||||||||||||||| |||| |||||||||||||||| Sbjct 9817222 AGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCAGACATCTAAGGGCATCA 9817163 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||||||||| ||||| || ||||| Sbjct 9817162 CAGACCTGTTATTG-CTCAATCTCGGGTGGC 9817133 >seq43 Length=20637118 Score = 123 bits (136), Expect = 4e-26 Identities = 143/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 46 CTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 |||||| |||||| ||||||| | | || ||||||||| | ||||||||||||| Sbjct 20627281 CTTACTGGGAATT-CCTCGTTCATGGGGAATAATTGCAATCTCCGATCCCCATCACGAAT 20627223 Query 106 AAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG 164 ||||| | ||||||| |||| |||| ||| | || || ||| |||| Sbjct 20627222 GGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAG 20627163 Query 165 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 224 |||||||||||||| |||| | |||||||||||||||||||||||||||||| ||||| | Sbjct 20627162 TGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATC 20627104 Query 225 TTCCGTGGC 233 | ||||| Sbjct 20627103 TCGGGTGGC 20627095 >seq263 Length=3790467 Score = 118 bits (130), Expect = 2e-24 Identities = 139/184 (76%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 2875276 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 2875219 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 2875218 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 2875159 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 2875158 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 2875099 Query 180 GCCC 183 |||| Sbjct 2875098 GCCC 2875095 >seq5 Length=38686854 Score = 109 bits (120), Expect = 8e-22 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||||||| | | || |||||||| ||||||||||||||| ||||| | Sbjct 22676966 TTCCTCGTTCATGGGGAATAATTGCAACCCCCTATCCCCATCACGAATGGGGTTCAATGG 22677025 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| |||| | || ||| | || || |||| | |||||||||||||| Sbjct 22677026 GTTACCCGCGCCTGCCAGCATAGGGTAGGCACACGCTGAACCAGTTAGTGTAGCGCGCGT 22677085 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 22677086 GCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCAGGTGGC 22677141 >seq45 Length=19174779 Score = 95.1 bits (104), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 37 TGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCC 96 |||| | | |||||| |||||| ||||||| | | ||| ||||||||| || ||| Sbjct 11319865 TGACCCACACTTACTGGGAATT-CCTCGTTCATGGGCAATAATTGCAATTCCTGATTCCC 11319807 Query 97 ATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGA 155 ||||||| ||||| || |||||| ||||| | | ||| | | || || ||| Sbjct 11319806 ATCACGAATGGGGTTCAACGACTTACCCACACCTGACAGTGTAGGGTAGACACACGCTGA 11319747 Query 156 ATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATT 215 |||||||| || | ||| |||| ||||||||||||||||||| ||||||||| Sbjct 11319746 GCCAGTCAGTGTAACGTACATGCAGCCCCAGACATCTAAGGGCATCACAGTCCTGTTATT 11319687 Query 216 GCCTCAAACTTCCGTGGC 233 | ||||| || ||||| Sbjct 11319686 G-CTCAATCTCGGGTGGC 11319670 >seq61 Length=17507673 Score = 93.3 bits (102), Expect = 6e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||| | Sbjct 11222142 TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCC-C 11222200 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 11222201 AATCTCAGGTGGC 11222213 >seq252 Length=4103016 Score = 87.8 bits (96), Expect = 3e-15 Identities = 166/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | | ||| ||||| || |||||| |||||| | Sbjct 3220698 GTACAAAGGGCAGGGACTTAATCAACACAACCTT-ATGACCTGCACTTACT-GGAATT-C 3220642 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||| | | || || ||||| | || ||||| || || Sbjct 3220641 CTCATTCATGGGGAATAATTGTAGTCCCTGATTCC-ATCACAAATAAGATTCAACGAGTT 3220583 Query 120 ACCCGGACCTG-TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||||| | || | ||| | || | || | ||||||||| | || ||| Sbjct 3220582 ACCTGCACCTGCTAGGATAGGGTTAAGCACATGCCGAGCAAGTCAGTGTAGTGAGCCTGC 3220523 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| ||||||| ||||||||||||| |||||| ||||| || ||||| Sbjct 3220522 AGCCCCAGGCATCTAAAGGCATCACAGACCATTTATTG-CTCAATCTCTGGTGGC 3220469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751936125120