Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq190 165 1e-38 seq61 114 2e-23 seq357 111 3e-22 seq98 86.0 1e-14 seq10 86.0 1e-14 seq422 82.4 1e-13 seq9 82.4 1e-13 seq27 75.2 2e-11 >seq190 Length=6459378 Score = 165 bits (182), Expect = 1e-38 Identities = 206/278 (74%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||||||| || ||| | | | |||||||||||||||||||||||| Sbjct 5676165 ATGCTCTTAGCTGAGTGTGCCGTGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 5676106 Query 98 TCAAAGCAGGCCTTTG---CTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||| |||||| | | | |||| ||| |||||||| ||||||||| |||| Sbjct 5676105 TCAAACCAGGCCCGAGAGGCCAGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 5676047 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 5676046 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 5675987 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||| ||||||||||| | |||| || | |||||| | Sbjct 5675986 GTATTGCGCCGCTAGAGGTTAAATTCTTGGACCGGTGCAAGAAGGACCAGAGCGAAAACA 5675927 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || |||||| |||||||||||||||| ||| |||||| Sbjct 5675926 TTTACCAAGAATGTTTTCATTAATCA-AGAATGAAAGT 5675890 >seq61 Length=17507673 Score = 114 bits (126), Expect = 2e-23 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||||| | || | | ||||| Sbjct 11222103 GGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 11222045 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | |||||| | |||| | |||||||||||||||||| Sbjct 11222044 TAAGAGGGACGGCCGGGGGCATTCGTATCGCGCCGCTAGAGGTGAAATTCTTGGACCGGC 11221985 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 11221984 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 11221926 Query 311 GT 312 || Sbjct 11221925 GT 11221924 >seq357 Length=1990190 Score = 111 bits (122), Expect = 3e-22 Identities = 199/286 (70%), Gaps = 15/286 (5%) Strand=Plus/Minus Query 38 CATGCCCTTCACTGGGTGTGCCGGGGAGCC-AGGACTTTTACTTTGAAAAAATTA-GAGT 95 ||||| || ||| |||| | | || ||| | || |||||||||||||| ||| |||| Sbjct 1590387 CATGCTCTCAGCTGAGTGTTCTGTGGGGCCCAAAACATTTACTTTGAAAAACTTAAGAGT 1590328 Query 96 GTTCAAAGCAGGCCTTTGC--TC-GAATACATTAGCATGGAATAATAGAATAGGACGTGC 152 ||||||| |||||| | || | |||| ||| |||||||| ||||||||| Sbjct 1590327 GTTCAAAACAGGCCCGAGGCGTCTGGATACTGCAGCTAGGAATAATGGAATAGGACA--- 1590271 Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||| | | | | | |||||||| |||| | || || | Sbjct 1590270 ------ATTTTGTTGGTTTTTGGAAATGAAGCCATGATTAAGAGGGTCGGCTGGAGGCAT 1590217 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 || || || |||||||||||||||||| | ||||| |||| || ||||| Sbjct 1590216 TTGTGTTGGGCTGCTAGAGGTGAAATTCTTGGACCAGTGCAAGACGGACTAGTGAGAAAG 1590157 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || | ||| ||||||||||||| || |||||||||| || || Sbjct 1590156 CATTTGCTAAGAATGTTTTCATTAACCA-AGAACGAAAGTCAGAGG 1590112 >seq98 Length=13236748 Score = 86.0 bits (94), Expect = 1e-14 Identities = 159/229 (69%), Gaps = 11/229 (5%) Strand=Plus/Plus Query 76 TACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCT---CGAATACATTAGCATGG 132 ||||| |||||| ||||||||||||||||||||| ||| | |||| || | Sbjct 9082862 TACTTGGAAAAATTTAGAGTGTTCAAAGCAGGCCAGAGCTTCCTGGATACTGCAGATAGA 9082921 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| | |||||| | |||| |||||||| ||| | | || | ||||||| Sbjct 9082922 AATAATGGCATAGGA-TCACAGTTCCATTTTGTTCATTTTTGGAACTGAGACCATGATTA 9082980 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTC---AGAGGTGAAATTCTTGGATTTA 249 | ||||| ||| ||| |||| | ||| || | ||||||||| ||||| || | Sbjct 9082981 AGAGGGACAGTTGGG---GTCATTTTTCTTGTGCCACTAGAGGTGAATTTCTTAGA-CTG 9083036 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 | ||||| || | | |||||| || |||||||||||| ||||| Sbjct 9083037 CTCAAGACAGACCAGAGTGAAAGCATTTGTGAAGGATGTTTTCCTTAAT 9083085 >seq10 Length=34584438 Score = 86.0 bits (94), Expect = 1e-14 Identities = 170/246 (69%), Gaps = 12/246 (5%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAA-ATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCA 129 |||||||||||||| ||||| || ||| ||| ||| | ||| | |||| ||| Sbjct 34277729 TTTACTTTGAAAAACATTAGGGTCTTCTAAGTAGGTCCGAGCTGCCTGGATACCACAGCT 34277670 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||||| |||||| || || ||||||||||||||| || | | | | | |||| Sbjct 34277669 AGGAATAAAGGAATAGAAC-TGTAGTTCTATTTTGTTGGGTTTTGGAATAGAGGCCATGA 34277611 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGAT 246 ||| |||||| | |||||| | |||| || || ||||||||||| || || Sbjct 34277610 TTAGAAGGGATGGATGGGGGTATTTTTATTG---TGCCACAAGAGGTGAAATTATTAGAC 34277554 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| || | || ||||| || ||||| || |||| |||||||| ||| Sbjct 34277553 CAGCACAAGACAGACCAGAGCAAAAGCATTTGCCAAGAATATTTTTATTAATCA-AGAAT 34277495 Query 307 GAAAGT 312 |||||| Sbjct 34277494 GAAAGT 34277489 >seq422 Length=1253750 Score = 82.4 bits (90), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 13/229 (6%) Strand=Plus/Minus Query 90 TAGAGTGTTCAAAGCAGGCCTTTG----CTCGAATACATTAGCATGGAATAATAGAATAG 145 |||||||||||||| |||| | | || || ||| ||| |||||| ||||| Sbjct 531816 TAGAGTGTTCAAAGTAGGCTTGAGACAACTGGA-TACCACAGCTAAAAATAATGGAATAA 531758 Query 146 GACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCG 205 ||| | ||||||||||||||| ||| | || | | |||||||| ||| |||| | Sbjct 531757 GACC-GTGGTTCTATTTTGTTGTTTTTCGGAACTGAGGCCATGATTAAGAGGAATAGCCA 531699 Query 206 GGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGATTTATTGAAGACTAACT 262 ||| | ||||| || || ||||||||||||||| | | | |||| ||| Sbjct 531698 GGGACATTGGTATTG---TGCCACTAGAGGTGAAATTCTTGAACTGGTGCAAGATGAACC 531642 Query 263 ACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 | || ||| || ||||| |||||||||||||||| ||| ||||| Sbjct 531641 AGAGCAAAATAATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAAG 531594 >seq9 Length=36036951 Score = 82.4 bits (90), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 9/163 (6%) Strand=Plus/Minus Query 152 CGGTTCTATTTTGTTGGTTTCTAGGACC----GCCGTAATGATTAATAGGGATAGTCGGG 207 ||||||| |||||||||||| | ||| | ||| |||||||| |||||| | | || Sbjct 11110767 CGGTTCTCTTTTGTTGGTTT-TCGGAACTAAGGCC---ATGATTAAGAGGGATGGCCAGG 11110712 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | |||| ||| | |||||||||||||||| ||||| ||| | || Sbjct 11110711 GGCATTCATATTGTGTTGCTATAGGTGAAATTCTTGGACCAGCACAAGACCAACCAGAGC 11110652 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||||| || ||||| | |||||||||||||| ||| |||| Sbjct 11110651 GAAAGCATTTGCCAAGAAAGTTTTCATTAATCA-AGAATGAAA 11110610 >seq27 Length=21973199 Score = 75.2 bits (82), Expect = 2e-11 Identities = 166/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC----CTTTGCTCGAATACATTAGC 128 || |||||||||||| ||||| |||||||||||||| || | || | ||| ||| Sbjct 18670648 TTCTACTTTGAAAAA-TTAGAATGTTCAAAGCAGGCCAGACTCTACT-GGCTACCACAGC 18670705 Query 129 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 || ||||| || |||||| | ||||||| |||||| |||| || || | | || Sbjct 18670706 TAGGTATAATGGAGTAGGAC-AGTGGTTCTACTTTGTTTGTTTTCAGAACTGAAGCTGTG 18670764 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||| | ||||| | ||||| | |||| |||| ||| |||||| | Sbjct 18670765 ATTAAGGAGGACA-AAGGGGGCATTTGTATTGCACCACCAGAAGTGAGATTGTTGGATCT 18670823 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | ||||| || || |||| || || || ||||||||| ||| || ||| || Sbjct 18670824 GTGCAAGACAGACAGTGGCAAAAGTATTTGCCTAGAATGTTTTCACTAACCA-AGAATGA 18670882 Query 309 AA 310 || Sbjct 18670883 AA 18670884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915119755264