Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2498 511 1e-142 seq4146 298 1e-78 >seq2498 Length=5872 Score = 511 bits (566), Expect = 1e-142 Identities = 359/408 (88%), Gaps = 1/408 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 815 TACCATAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 874 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||||||||||||||||||||||||||| |||||| ||||| | |||| ||| ||| Sbjct 875 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGCGCAGACGGTTATTTAAGTCAGATGT 934 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||| ||||||| |||||| ||| |||| |||| |||||||| ||| ||| Sbjct 935 GAAATCCCCGAGCTTAACTTGGGAACTGCGTTTGAAACTGGGTAACTAGAGTATGTAAGA 994 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 | ||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||| |||| Sbjct 995 GAGGGGTAGAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAAGAATACCGATGG 1054 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||||||||| ||||| || ||||||| |||||| |||||||||||||||||||||| Sbjct 1055 CGAAGGCAGCCCCTTGGGACAATACTGACGTTCATGCTCGAAAGCGTGGGGAGCAAACAG 1114 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||| ||| |||||||| | Sbjct 1115 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCAATTAGCTGTTGGGGCACGAGA 1174 Query 363 TCCTT-GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || ||| || |||||||||||||| ||||||||||||||| ||| Sbjct 1175 TGTTTCAGTAGCGAAGCTAACGCGTGAAATTGACCGCCTGGGGAGTAC 1222 >seq4146 Length=3813 Score = 298 bits (330), Expect = 1e-78 Identities = 302/391 (77%), Gaps = 3/391 (1%) Strand=Plus/Minus Query 21 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTA 80 |||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||| Sbjct 3807 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTATCCGGATTTA 3748 Query 81 CTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAAC 140 ||||||||||||| |||||||||||| | ||| | | || ||| | |||||||| Sbjct 3747 TTGGGCGTAAAGCGAGCGCAGGCGGTTTAGAAAGTCTGAAGTTAAAGGCTGTGGCTTAAC 3688 Query 141 CTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACG 200 | | || || || | ||||| ||| ||||| || |||| ||||||||||| | Sbjct 3687 CATAGTAT-GCTTTGGAAACTGCTAAACTTGAGTGCAGAAGGGGGGAGTGGAATTCCATG 3629 Query 201 TGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGG 260 |||||| ||||||||||||||||| |||||||||||| ||||||| || || | |||| Sbjct 3628 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCGGTGGCGAAAGCGGCTCTCTGGT 3569 Query 261 ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 320 | ||||||||| | || |||||||||||| ||| ||||||||||||||||||||||| Sbjct 3568 CTGTAACTGACGCTGAGGCTCGAAAGCGTGGGTAGCGAACAGGATTAGATACCCTGGTAG 3509 Query 321 TCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC--TTCCTTGGTAACGTAGC 378 |||||||| |||||||| |||| |||| || | | ||| || |||||| Sbjct 3508 TCCACGCCGTAAACGATGAGTGCTAGGTGTTAGGCCCTATCCGGGGCTTAGTGCCGTAGC 3449 Query 379 TAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||||| ||| ||||||||||| ||| Sbjct 3448 TAACGCAATAAGCACTCCGCCTGGGGAGTAC 3418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289486927872