Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2498 159 5e-37 seq4146 156 6e-36 >seq2498 Length=5872 Score = 159 bits (176), Expect = 5e-37 Identities = 189/252 (75%), Gaps = 7/252 (3%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 4297 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 4239 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| || | |||||||||||| | ||| | Sbjct 4238 GTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGTTTCTCTGCGACCCTCCTATGCTTAC 4179 Query 122 ----CACGTCGTTCACCAGCAGTGGC-ACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || | | ||||| | || || | ||||||||||||||||||| || ||||| Sbjct 4178 AGGGCAAGCCTTTCAC-ATTAGAGGGTATACCTTCTCCCGAAGTTACGGTATCAATTTGC 4120 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 ||| |||||| || ||||| | | | |||||||| |||||| |||| |||||||||| Sbjct 4119 CGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATTCTCATCCTGCCCACCTGTGT 4060 Query 237 CGGTTTACGGTA 248 |||||| ||||| Sbjct 4059 CGGTTTGCGGTA 4048 >seq4146 Length=3813 Score = 156 bits (172), Expect = 6e-36 Identities = 185/248 (75%), Gaps = 22/248 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||| || |||||||| ||||| | || ||| Sbjct 275 CTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTTACGAT-TTAGCAG 333 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 || |||||||||| |||||||| |||| |||||| ||||| ||||| Sbjct 334 AGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCCTATTCACTGCG----------GCTCA 383 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| || || | | | ||||||||||||||||||||||||||||||||||| Sbjct 384 ----GTC--TC----GCTGAG-CGCCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAG 432 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| | ||| | ||| || | ||| | ||| |||||||||||| Sbjct 433 TTCCTTAACGAGAGTTCTCTCGATCACCTGAGGCTACTCGCCTCGACTACCTGTGTCGGT 492 Query 241 TTACGGTA 248 || ||||| Sbjct 493 TTGCGGTA 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694341017664