Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq4146 111 2e-22 seq2498 77.0 3e-12 >seq4146 Length=3813 Score = 111 bits (122), Expect = 2e-22 Identities = 133/176 (76%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAA-TCACGGTT 80 ||||||| |||||| ||||||| | || || || ||| | | ||| ||| || || || Sbjct 497 CGCAAACCGACACAGGTAGTCGAGGCGAGTAGCCTCAGGTGATCGAGAGAACTCTCG-TT 439 Query 81 AAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGG 140 |||||||| |||||| || ||| |||||||||||| || ||| | | | || | || Sbjct 438 AAGGAACTCGGCAAAATGGCCCCGTAACTTCGGGAGAAGGGGCGCTCAGCGAG-ACTG-- 382 Query 141 AGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | ||||| ||||||| ||| ||||||||||| ||||||||||| || ||| || Sbjct 381 -AGCCGCAGTGAATAGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAA 327 >seq2498 Length=5872 Score = 77.0 bits (84), Expect = 3e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | | || ||| || |||||||||||||| ||| || | Sbjct 4051 CGCAAACCGACACAGGTGGGCAGGATGAGAATTCTAAGGCGCTTGAGAGAACTCGGGAGA 4110 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||| |||||| ||| | |||||||||||| || Sbjct 4111 AGGAACTCGGCAAATTGATACCGTAACTTCGGGAGAA 4147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531154879872