Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq2498 168 6e-40 seq4146 100 3e-19 >seq2498 Length=5872 Score = 168 bits (186), Expect = 6e-40 Identities = 116/131 (89%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26 CTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAA 85 ||||| | |||||| | | ||||| ||| | || ||||||||||||||||||||| Sbjct 4171 CTTGCCCTGTAAGCATAGGAGGGTCGCAGAGAAACGGTGGCTGCGACTGTTTATTAAAAA 4230 Query 86 CACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGA 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4231 CACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCTGGA 4290 Query 146 AGGTTAATTGA 156 ||||||||||| Sbjct 4291 AGGTTAATTGA 4301 >seq4146 Length=3813 Score = 100 bits (110), Expect = 3e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| || ||||||||| ||||||||||| |||||| || || ||| || ||||| Sbjct 368 AGGCCCAAGCAACTGTTTATCAAAAACACAGCTCTCTGCTAAATCGTAAGATGATGTATA 309 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| |||||||||||||||||| |||||||||| Sbjct 308 GGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAA 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476759500608