Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2498 453 3e-125 seq4146 316 5e-84 >seq2498 Length=5872 Score = 453 bits (502), Expect = 3e-125 Identities = 343/404 (85%), Gaps = 9/404 (2%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| | ||||||| ||| |||||||||||| |||||||| | |||||||| Sbjct 4471 TGCATCTTCACAACCATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGT 4412 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4411 TACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 4352 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT 191 || |||||||||||||||||| |||||||||||| |||| || || | | Sbjct 4351 ATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCCGATGCTT-------GC--ACATCTT 4301 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4300 CAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 4241 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311 ||||||||||||||||||||||||||||||| || | ||| ||||| | | |||| Sbjct 4240 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGTTTCTCTGCGACCCTCCTATGCTT 4181 Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 || | ||||| | ||||| | || ||||||||||||||||||||| | |||| Sbjct 4180 ACAGGGCAAGCCTTTCACATTAGAGGGTATACCTTCTCCCGAAGTTACGGTATCAATTTG 4121 Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 || ||||||||| |||||||||||||||||||||| | |||||| Sbjct 4120 CCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATTCTC 4077 >seq4146 Length=3813 Score = 316 bits (350), Expect = 5e-84 Identities = 313/405 (77%), Gaps = 25/405 (6%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| | | |||||||| ||||||| || ||||||| Sbjct 82 CGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGAGTCTCTCGTTGAGACAGT 141 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 142 GCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 201 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| |||||||| || ||| |||||| | Sbjct 202 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGATCTTCGCTTGC 261 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||| ||| | |||||||||| |||||||||||||||||| |||||||| || ||| Sbjct 262 GCTAAACCCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTT 321 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || || |||||| ||||||||||| ||||||||| || |||| | ||| || Sbjct 322 ACGATTTAGCAGAGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCC-----TATTC-AC- 374 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 | ||| || || | || | |||| |||||||||||||||||| Sbjct 375 ----------TGCGG-----CTCAGTCTCGCTGA---GCGCCCCTTCTCCCGAAGTTACG 416 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCT 405 | ||| ||||||| |||||||| | |||||||||| | | ||| Sbjct 417 GGGCCATTTTGCCGAGTTCCTTAACGAGAGTTCTCTCGATCACCT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260689453056