Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq2498 453 3e-125
seq4146 316 5e-84
>seq2498
Length=5872
Score = 453 bits (502), Expect = 3e-125
Identities = 343/404 (85%), Gaps = 9/404 (2%)
Strand=Plus/Minus
Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
|||||||||||| | ||||||| ||| |||||||||||| |||||||| | ||||||||
Sbjct 4471 TGCATCTTCACAACCATTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGT 4412
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4411 TACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 4352
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT 191
|| |||||||||||||||||| |||||||||||| |||| || || | |
Sbjct 4351 ATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCCGATGCTT-------GC--ACATCTT 4301
Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4300 CAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 4241
Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTT 311
||||||||||||||||||||||||||||||| || | ||| ||||| | | ||||
Sbjct 4240 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCCACCGTTTCTCTGCGACCCTCCTATGCTT 4181
Query 312 ACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371
|| | ||||| | ||||| | || ||||||||||||||||||||| | ||||
Sbjct 4180 ACAGGGCAAGCCTTTCACATTAGAGGGTATACCTTCTCCCGAAGTTACGGTATCAATTTG 4121
Query 372 CCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415
|| ||||||||| |||||||||||||||||||||| | ||||||
Sbjct 4120 CCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATTCTC 4077
>seq4146
Length=3813
Score = 316 bits (350), Expect = 5e-84
Identities = 313/405 (77%), Gaps = 25/405 (6%)
Strand=Plus/Plus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| || |||||||||||||| | | |||||||| ||||||| || |||||||
Sbjct 82 CGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGAGTCTCTCGTTGAGACAGT 141
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 142 GCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 201
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| |||||||| || ||| |||||| |
Sbjct 202 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGATCTTCGCTTGC 261
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||| ||| | |||||||||| |||||||||||||||||| |||||||| || |||
Sbjct 262 GCTAAACCCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTT 321
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|| || |||||| ||||||||||| ||||||||| || |||| | ||| ||
Sbjct 322 ACGATTTAGCAGAGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCC-----TATTC-AC- 374
Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360
| ||| || || | || | |||| ||||||||||||||||||
Sbjct 375 ----------TGCGG-----CTCAGTCTCGCTGA---GCGCCCCTTCTCCCGAAGTTACG 416
Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCT 405
| ||| ||||||| |||||||| | |||||||||| | | |||
Sbjct 417 GGGCCATTTTGCCGAGTTCCTTAACGAGAGTTCTCTCGATCACCT 461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260689453056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |