Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2498 172 1e-40 >seq2498 Length=5872 Score = 172 bits (190), Expect = 1e-40 Identities = 235/319 (74%), Gaps = 13/319 (4%) Strand=Plus/Plus Query 27 GATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGAT-TTCT 85 || |||||||| | ||||||| ||| |||| |||| || || || || |||| Sbjct 4573 GAAACGCCAGTTTCTGTGGAGCCGTCCTTGAAATACCACCC-TGGTGACTTTGAGGTTCT 4631 Query 86 AACCG-GACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCG 144 |||| ||| | ||| | || | ||||| ||| | |||||||||||||||||| Sbjct 4632 AACCCAGACCCCTTATCAGGGTCG--GGGACCGTGCATGGTAGGCAGTTTGACTGGGGCG 4689 Query 145 GTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGAT-GGAAACC- 202 ||| ||||||||||||||||||||| | | ||| | ||| || | | | ||||| | Sbjct 4690 GTCTCCTCCCAAAGAGTAACGGAGGAGTTCGAAGGTTACCT-AGTTCCGGTCGGAAATCG 4748 Query 203 --ATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGG 260 ||| | ||||||| |||| |||| | || ||||||| ||| |||||| |||||| Sbjct 4749 GAATG---ATAGTGCAATGGCATAAGGTAGCTTAACTGCGAGACCGACAAGTCGAGCAGG 4805 Query 261 GACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGAT 320 |||||| || | || |||||||| ||| |||||||||| |||| |||||| |||||| Sbjct 4806 TGCGAAAGCAGGACATAGTGATCCGGTGGTTCTGAATGGAAGGGCCATCGCTCAACGGAT 4865 Query 321 AAAAGCTACCCTGGGGATA 339 ||||| ||| | ||||||| Sbjct 4866 AAAAGGTACTCCGGGGATA 4884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982313863168