Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq6128 322 2e-85 seq2498 302 2e-79 >seq6128 Length=1461 Score = 322 bits (356), Expect = 2e-85 Identities = 429/589 (73%), Gaps = 18/589 (3%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||||| |||| | | |||||||| || |||| | | | | |||||||| Sbjct 850 TCGACTACGGATCTTAG-CACTCGCAGTCTGACTGCCGACCA-TAAATCTTTGGCATTCG 793 Query 61 GAGTTTGGTTGATTTCGGTAAGCTT-GTGGGCCCCCTAGACCATCCAGTGCTCTACCTCC 119 |||||| ||| | ||||| | | || ||||| ||| ||||||||||||||| Sbjct 792 GAGTTTATCTGAGATTGGTAATCCGAGATGGACCCCTCACCCAAACAGTGCTCTACCTCC 733 Query 120 GGGAAGAAACACG-CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAA 178 || || ||||||| |||||| ||||||| |||||||||||||| | || Sbjct 732 AAGATTCTTCATTTCGACGCTAGCCCTAAAGCTATTTCGGAGAGAACCAGCTATCTCCAA 673 Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| | |||| |||| || ||| ||||| ||||||| || |||||||| | || Sbjct 672 GTTCGTTTGGAATTTCTCCGCTACCCACAAGTCATCCAAGCACTTTTCAACGTGCCCTGG 613 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCT 298 |||||||||||| |||||||| ||||||||||| ||||| ||| |||| | | | Sbjct 612 TTCGGTCCTCCAGTGCGTCTTACCGCACCTTCAACCTGCTCATGGGTAGGTCACATGGTT 553 Query 299 TCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCC 358 |||||||| || | ||| | |||||||||| |||||| |||| || ||||| | Sbjct 552 TCGGGTCTATGTCCTCGTACTACTTCGCCCTATTCAGACTCGGTTTCCCTTCGGCTCCGT 493 Query 359 CAC-ACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACG 417 | | | |||||||||| || || ||||||| || ||||||| ||||||||||| Sbjct 492 CTCTTCAACTTAACCTCGC-ACGTAAACATAACTCGCCGGTTCATTCTACAAAAGGCACG 434 Query 418 CCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAG 477 | ||||| | | || || |||| || ||||||||||| |||||||| Sbjct 433 CTCTCACC-----CATTAACGG-------GCTCGAACTTCTTGTAGGCACACGGTTTCAG 386 Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 || || ||||||||||| || ||||| ||||||||||||||||||||||||| || | || Sbjct 385 GTTCTTTTTCACTCCCCTCCCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACT 326 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||||||||| | |||||||||||| || | |||||| |||||||| Sbjct 325 ATCGGTCACTAGGGAGTATTTAGGGTTGGGAGATGGTCCTCCCAGATTC 277 >seq2498 Length=5872 Score = 302 bits (334), Expect = 2e-79 Identities = 377/509 (74%), Gaps = 17/509 (3%) Strand=Plus/Minus Query 91 CCCCCTAGACCATC-CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAAT 149 |||||||| |||| ||||||| |||| || | ||| | | || || |||||||| Sbjct 3332 CCCCCTAG-CCATAACAGTGCTTTACCCCCAG-AAGTGATGCATGAGGCACTACCTAAAT 3275 Query 150 GCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGG 209 ||||||||||||||||||||| | |||||| || ||||||||||||||||||||| Sbjct 3274 AGTTTTCGGGGAGAACCAGCTATCTCCGAGTTTGTTTAGCCTTTCACCCCTATCCACAGT 3215 Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269 |||||||| || ||| |||| | |||||||||| |||||| || ||||| ||| Sbjct 3214 TCATCCCCGCATTTTGCAACATGCGTGGGTTCGGACCTCCAGTGCGTTTTACCGCACCTT 3155 Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCT 329 || |||| |||||||||||||||| | ||||||||| | | || ||| | ||||||| Sbjct 3154 CATCCTGACCATGGATAGATCACTCGGTTTCGGGTCTACACCCAGCAACTGA-ACGCCCT 3096 Query 330 ATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAA 389 ||| |||||| |||| || || || ||| || | |||||| || || || || | || Sbjct 3095 ATTAAGACTCGGTTTCCCTGCGCCTCCCCTACTC-GGTTAAGCTTGCTACTGAATG-TAA 3038 Query 390 CTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCT 449 ||| | | |||| | ||||||| |||| |||||| | ||| | ||| Sbjct 3037 GTCGTTGACCCATTATACAAAAGGTACGCAGTCACC---CAATTAA--------TGGGCT 2989 Query 450 CCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTT 509 || || | |||| ||| |||||||||| || ||||||||||| || ||||| ||||| Sbjct 2988 CCCACTGTATGTATGCATCAGGTTTCAGGTTCTGTTTCACTCCCCTCCCGGGGTTCTTTT 2929 Query 510 CACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGG 569 | |||||||||||||||||| || | ||||||||| | |||||||||| ||| || Sbjct 2928 CGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGG 2869 Query 570 GTGGTCCCGCCAGATTCACACGAAATTTC 598 ||||||| ||| |||| || ||||| Sbjct 2868 ATGGTCCCCCCATCTTCAGACAGGATTTC 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817440632832