Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq2498 403 4e-110
seq6128 239 1e-60
>seq2498
Length=5872
Score = 403 bits (446), Expect = 4e-110
Identities = 346/415 (83%), Gaps = 11/415 (3%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| || | |||| |||| || ||||||| |||||||| |
Sbjct 3226 CCTATCCACAGTTCATCCCCGCA--TTTTGCAACATGCGTGGGTTCGGACCTCCAGTGCG 3169
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||||| || |||| |||| ||||||||| | |||||| |||||||| |
Sbjct 3168 TT-TTACCGCACCTT-CATCCTGACCAT-GGATAGATCACTCGGTTT-CGGGTCTACA-C 3114
Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183
||||| ||| |||||||| ||||||||| ||| | || ||||||||||| |||||||||
Sbjct 3113 CCAGCAACTGAACGCCCTATTAAGACTCGGTTTCC-CTGCGCCTCCCCTACTCGGTTAAG 3055
Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243
||| || |||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 3054 CTT-GCTACTGAATGTAAGTCGTTGACCCATTATACAAAAGGTACGCAGTCACCCAATTA 2996
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
| ||||||||||||| |||| |||| ||||||||| ||| ||||||||||||| ||||
Sbjct 2995 A-TGGGCTCCCACTGTATGTATGCATCAGGTTTCAGGTTCTGTTTCACTCCCCTC-CCGG 2938
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||
Sbjct 2937 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAG 2878
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
|||||||||||||||||||||| |||||||| ||||||||| ||| ||||||
Sbjct 2877 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCTCGTGTCCCGCCCTACT 2823
>seq6128
Length=1461
Score = 239 bits (264), Expect = 1e-60
Identities = 287/377 (76%), Gaps = 11/377 (3%)
Strand=Plus/Minus
Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104
|||||||||||||||| || ||||| ||||| |||||||| ||| || ||| || |
Sbjct 614 GGTTCGGTCCTCCAGTGCGTC-TTACCGCACCTT-CAACCTGCTCATGGG-TAGGTCACA 558
Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTAC 163
||||| ||||||||| ||| | |||| ||||||| | ||||||| ||| | || |
Sbjct 557 TGGTTT-CGGGTCTATGTCCTCGT-ACTACTTCGCCCTATTCAGACTCGGTTTCC-CTTC 501
Query 164 GCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAA 222
| |||| || ||| | | | | || | || |||| |||| | |||| ||||||
Sbjct 500 GGCTCCGTCTCTTCAACTTAACCTCGCACGTAAACATAACTCGCCGGTTCATTCTACAAA 441
Query 223 AGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282
||| |||| ||||||| || | ||||| ||| |||||| ||| ||||||||||| |
Sbjct 440 AGGCACGCTCTCACCCATTAACG--GGCTCGAACTTCTTGTAGGCACACGGTTTCAGGTT 383
Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTAT 342
|| ||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||
Sbjct 382 CTTTTTCACTCCCCTC-CCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTAT 324
Query 343 CGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCT 402
|||||| | | ||||||||| |||| |||||||| |||| |||| ||| || ||
Sbjct 323 CGGTCACTAGGGAGTATTTAGGGTTGGGAGATGGTCCTCCCAGATTCCGACGGGATTCCT 264
Query 403 CGTGCTCCGTCCTACTC 419
|||| ||| | |||||
Sbjct 263 CGTGTCCCGCCGTACTC 247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241491136512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |