Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2498 403 4e-110 seq6128 239 1e-60 >seq2498 Length=5872 Score = 403 bits (446), Expect = 4e-110 Identities = 346/415 (83%), Gaps = 11/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || | |||| |||| || ||||||| |||||||| | Sbjct 3226 CCTATCCACAGTTCATCCCCGCA--TTTTGCAACATGCGTGGGTTCGGACCTCCAGTGCG 3169 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||||| || |||| |||| ||||||||| | |||||| |||||||| | Sbjct 3168 TT-TTACCGCACCTT-CATCCTGACCAT-GGATAGATCACTCGGTTT-CGGGTCTACA-C 3114 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| ||| |||||||| ||||||||| ||| | || ||||||||||| ||||||||| Sbjct 3113 CCAGCAACTGAACGCCCTATTAAGACTCGGTTTCC-CTGCGCCTCCCCTACTCGGTTAAG 3055 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3054 CTT-GCTACTGAATGTAAGTCGTTGACCCATTATACAAAAGGTACGCAGTCACCCAATTA 2996 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||||||||| |||| |||| ||||||||| ||| ||||||||||||| |||| Sbjct 2995 A-TGGGCTCCCACTGTATGTATGCATCAGGTTTCAGGTTCTGTTTCACTCCCCTC-CCGG 2938 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 2937 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATGATGAGTATTTAG 2878 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct 2877 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCTCGTGTCCCGCCCTACT 2823 >seq6128 Length=1461 Score = 239 bits (264), Expect = 1e-60 Identities = 287/377 (76%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 |||||||||||||||| || ||||| ||||| |||||||| ||| || ||| || | Sbjct 614 GGTTCGGTCCTCCAGTGCGTC-TTACCGCACCTT-CAACCTGCTCATGGG-TAGGTCACA 558 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTAC 163 ||||| ||||||||| ||| | |||| ||||||| | ||||||| ||| | || | Sbjct 557 TGGTTT-CGGGTCTATGTCCTCGT-ACTACTTCGCCCTATTCAGACTCGGTTTCC-CTTC 501 Query 164 GCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAA 222 | |||| || ||| | | | | || | || |||| |||| | |||| |||||| Sbjct 500 GGCTCCGTCTCTTCAACTTAACCTCGCACGTAAACATAACTCGCCGGTTCATTCTACAAA 441 Query 223 AGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGAT 282 ||| |||| ||||||| || | ||||| ||| |||||| ||| ||||||||||| | Sbjct 440 AGGCACGCTCTCACCCATTAACG--GGCTCGAACTTCTTGTAGGCACACGGTTTCAGGTT 383 Query 283 CTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTAT 342 || ||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||| Sbjct 382 CTTTTTCACTCCCCTC-CCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTAT 324 Query 343 CGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCT 402 |||||| | | ||||||||| |||| |||||||| |||| |||| ||| || || Sbjct 323 CGGTCACTAGGGAGTATTTAGGGTTGGGAGATGGTCCTCCCAGATTCCGACGGGATTCCT 264 Query 403 CGTGCTCCGTCCTACTC 419 |||| ||| | ||||| Sbjct 263 CGTGTCCCGCCGTACTC 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241491136512