Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq6128 251 2e-64 seq2498 205 2e-50 >seq6128 Length=1461 Score = 251 bits (278), Expect = 2e-64 Identities = 297/398 (75%), Gaps = 3/398 (1%) Strand=Plus/Minus Query 5 TACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGG 64 ||| ||| |||| ||| ||||||| ||||||| ||||||||| ||| | | | |||||| Sbjct 1244 TACACCTTTCGGTCTCTCCTTAGGTCCCGACTAACCCAGGGCGGACGAGCCTTCCCCTGG 1185 Query 65 AACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTGCATT 124 || |||| | ||| ||| ||||||| ||||| || |||||||||| || ||||| Sbjct 1184 AAACCTTAGTCTTACGGTGGATGGGATTCTCACCCATCTTGCGCTACTCATACCGGCATT 1125 Query 125 CTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTC 184 |||||| || ||||| ||| | |||| | |||| | | | | |||||| Sbjct 1124 CTCACTTCTATGCGCTCCAGCACTC-CTCACGGTATACCTTCTTCGCACATAGAACGCTC 1066 Query 185 CCCTACC-CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATT 243 |||||| || || || |||||||||||| || || ||||||| |||||| Sbjct 1065 TCCTACCATTCCCTTACGGGAATCCACAGCTTCGGTAAATTGTTTTAGCCCCGGTACATT 1006 Query 244 ATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA-GGATGGCTGCTT 302 ||||||| | ||||| ||| |||||||||||||||||||||| || | || ||||||| Sbjct 1005 TTCGGCGCAGGGTCACTCGACTAGTGAGCTATTACGCACTCTTTGAATGAATAGCTGCTT 946 Query 303 CCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTT 362 | |||| ||| |||| ||||||| ||||| ||||||||||| ||||| | | | || Sbjct 945 CTAAGCTAACATCCTAGTTGTCTGTGCAACCCCACATCCTTTTCCACTTAACAATTATTT 886 Query 363 AGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| ||||||||| || |||||||||||||||| ||| Sbjct 885 TGGGACCTTAGCTGGTGGTCTGGGCTGTTTCCCTTTCG 848 >seq2498 Length=5872 Score = 205 bits (226), Expect = 2e-50 Identities = 297/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||| |||||||| ||||||||||| || || ||| | | Sbjct 3823 CGACTACGCATTTCTGCCTTGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCG 3764 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||||| |||||| ||||| || ||||||| | ||||||||||| | Sbjct 3763 TAGGAAACCTTGGGCTTTCGGCGAACGGGCTTTTCACCCGTTTTATCGCTACTCATGTCA 3704 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGT-CACCCGGCAGCTTCACCA-CTGACA 176 ||||| |||| | || | ||||| || || | || | || |||||| || ||| Sbjct 3703 ACATTCGCACTTCTGAT-ACCTCCAGCAGACTTTACAATCTGC--CTTCACAGGCTTACA 3647 Query 177 CGACGCTCCCCTACCCAACCACACAGGT----TGCCACAGCTTCGG---CGGATAACTTA 229 |||||||||||||||| ||| | | |||| ||||||||| | ||| || Sbjct 3646 GAACGCTCCCCTACCCAAT-ACATTGCTGTATTGCCGCAGCTTCGGTTACAGAT---TTG 3591 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||||| ||||| || |||| | | ||| ||||||||||||||||||| ||||| | Sbjct 3590 AGCCCCGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCTTTCTTTAA 3531 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 | |||||||||||| |||||||| |||||| ||||| || |||| || ||| |||| Sbjct 3530 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACTTCGTTTACCAC 3471 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || || ||| ||||||||| | |||||| ||||||||||| Sbjct 3470 TTAATCTGTCATTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 3422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177496748032