Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq6128 251 2e-64
seq2498 205 2e-50
>seq6128
Length=1461
Score = 251 bits (278), Expect = 2e-64
Identities = 297/398 (75%), Gaps = 3/398 (1%)
Strand=Plus/Minus
Query 5 TACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGG 64
||| ||| |||| ||| ||||||| ||||||| ||||||||| ||| | | | ||||||
Sbjct 1244 TACACCTTTCGGTCTCTCCTTAGGTCCCGACTAACCCAGGGCGGACGAGCCTTCCCCTGG 1185
Query 65 AACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTGCATT 124
|| |||| | ||| ||| ||||||| ||||| || |||||||||| || |||||
Sbjct 1184 AAACCTTAGTCTTACGGTGGATGGGATTCTCACCCATCTTGCGCTACTCATACCGGCATT 1125
Query 125 CTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTC 184
|||||| || ||||| ||| | |||| | |||| | | | | ||||||
Sbjct 1124 CTCACTTCTATGCGCTCCAGCACTC-CTCACGGTATACCTTCTTCGCACATAGAACGCTC 1066
Query 185 CCCTACC-CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATT 243
|||||| || || || |||||||||||| || || ||||||| ||||||
Sbjct 1065 TCCTACCATTCCCTTACGGGAATCCACAGCTTCGGTAAATTGTTTTAGCCCCGGTACATT 1006
Query 244 ATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA-GGATGGCTGCTT 302
||||||| | ||||| ||| |||||||||||||||||||||| || | || |||||||
Sbjct 1005 TTCGGCGCAGGGTCACTCGACTAGTGAGCTATTACGCACTCTTTGAATGAATAGCTGCTT 946
Query 303 CCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTT 362
| |||| ||| |||| ||||||| ||||| ||||||||||| ||||| | | | ||
Sbjct 945 CTAAGCTAACATCCTAGTTGTCTGTGCAACCCCACATCCTTTTCCACTTAACAATTATTT 886
Query 363 AGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| ||||||||| || |||||||||||||||| |||
Sbjct 885 TGGGACCTTAGCTGGTGGTCTGGGCTGTTTCCCTTTCG 848
>seq2498
Length=5872
Score = 205 bits (226), Expect = 2e-50
Identities = 297/409 (73%), Gaps = 18/409 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||| | || |||| |||||||| ||||||||||| || || ||| | |
Sbjct 3823 CGACTACGCATTTCTGCCTTGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCG 3764
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
|||| |||||| |||||| ||||| || ||||||| | ||||||||||| |
Sbjct 3763 TAGGAAACCTTGGGCTTTCGGCGAACGGGCTTTTCACCCGTTTTATCGCTACTCATGTCA 3704
Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGT-CACCCGGCAGCTTCACCA-CTGACA 176
||||| |||| | || | ||||| || || | || | || |||||| || |||
Sbjct 3703 ACATTCGCACTTCTGAT-ACCTCCAGCAGACTTTACAATCTGC--CTTCACAGGCTTACA 3647
Query 177 CGACGCTCCCCTACCCAACCACACAGGT----TGCCACAGCTTCGG---CGGATAACTTA 229
|||||||||||||||| ||| | | |||| ||||||||| | ||| ||
Sbjct 3646 GAACGCTCCCCTACCCAAT-ACATTGCTGTATTGCCGCAGCTTCGGTTACAGAT---TTG 3591
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289
||||||| ||||| || |||| | | ||| ||||||||||||||||||| ||||| |
Sbjct 3590 AGCCCCGTTACATCTTCCGCGCAGGACGACTCGACCAGTGAGCTATTACGCTTTCTTTAA 3531
Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349
| |||||||||||| |||||||| |||||| ||||| || |||| || ||| ||||
Sbjct 3530 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACTTCGTTTACCAC 3471
Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
| | || || ||| ||||||||| | |||||| |||||||||||
Sbjct 3470 TTAATCTGTCATTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 3422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177496748032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |