Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4146 271 1e-70 seq2498 176 7e-42 >seq4146 Length=3813 Score = 271 bits (300), Expect = 1e-70 Identities = 227/274 (83%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||||||||||||| | |||| | |||| |||||||| ||||| Sbjct 3537 CCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAGAGCCGCTTTCGCCACCGGTGT 3596 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||||| |||||||| | || || | |||| Sbjct 3597 TCCTCCATATATCTACGCATTTCACCGCTACACATGGAATTCCACTCCCCCCTTCTGCAC 3656 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAG-TTTTCACATCTGAC 179 ||||| | ||||||| || ||| |||| |||| || ||| || ||| || || ||| Sbjct 3657 TCAAGTTTAGCAGTTTCCAAAGCATACTAT-GGTTAAG-CCACAGCCTTTAACTTCAGAC 3714 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||| | | | |||||| |||||||||||||||||||||| | |||||| Sbjct 3715 TTTCTAAACCGCCTGCGCTCGCTTTACGCCCAATAAATCCGGATAACGCTCGGGACCTAC 3774 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 273 |||||||||||||||||||||||||||||||||| Sbjct 3775 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGT 3808 >seq2498 Length=5872 Score = 176 bits (194), Expect = 7e-42 Identities = 219/295 (74%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAAT---CCGCCTTCGCCACTGG 57 |||||||||||| || | | ||||||| | ||||| ||| | |||||||||| || Sbjct 1104 CCCACGCTTTCGAGCATGAACGTCAGT-ATTGTCC--CAAGGGGCTGCCTTCGCCATCGG 1048 Query 58 TGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAG 117 | ||| ||| || |||||||||||||| ||||||| ||||||| |||||| Sbjct 1047 TATTCTTCCACATCTCTACGCATTTCACTGCTACACGTGGAATTCTACC--CCTCTCTTA 990 Query 118 CA--CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATC 175 || ||| || | |||||||||| |||| ||| ||| | | ||||||||| Sbjct 989 CATACTCTAGTTACCCAGTTTCAAACGCAGTTCCCAAGTTAAGCTCGGGGATTTCACATC 930 Query 176 TGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 |||||| | ||| || | | | |||||| |||| ||| |||| ||||||| || | Sbjct 929 TGACTTAAATAACCGTCTGCGCTCGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACC 870 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||||||||||||||| |||||||| | |||| Sbjct 869 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTATGGTA 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828729601728