Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2498 288 3e-75 seq4146 109 2e-21 >seq2498 Length=5872 Score = 288 bits (318), Expect = 3e-75 Identities = 277/361 (77%), Gaps = 26/361 (7%) Strand=Plus/Plus Query 165 CTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAG 224 |||||||| |||||||| ||||| ||| ||||||| |||||||||||||| | ||||| Sbjct 569 CTGATTAGGTAGTTGGTGGGGTAAAGGCCTACCAAGCCGACGATCAGTAGCGGGTCTGAG 628 Query 225 AGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 ||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||||| Sbjct 629 AGGATGATCCGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTG 688 Query 285 GGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC 344 |||||| ||| |||||||| || |||||| |||| | |||||||| || ||||| | Sbjct 689 GGGAATTTTGGACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTGTATGAAGAAGGTC 748 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TAA 379 ||||| | |||||| || | | |||||| | | Sbjct 749 TTCGGATTGTAAAGTACTTTTGTATGGGAAGAAGATGAGCTGGTTAAGAGCTGGCTCTGA 808 Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 ||||||||| | || |||| ||||||||||||||||||||||||||||||||||||| Sbjct 809 TGACGGTACCATAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 868 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||| || ||||||| |||||||||| |||||||||| | ||| || |||| |||||| Sbjct 869 GGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGAGCGCAGACGGTTATTTAAGT 927 Query 500 C 500 | Sbjct 928 C 928 >seq4146 Length=3813 Score = 109 bits (120), Expect = 2e-21 Identities = 83/97 (86%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| Sbjct 3807 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTATCCGGATTTA 3748 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||||||| | ||| ||| ||||| ||||| Sbjct 3747 -TTGGGCGTAAAGCGAGCGCAGGCGGTTTAGAAAGTC 3712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497468690432