Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq4146 412 8e-113
seq2498 306 9e-81
>seq4146
Length=3813
Score = 412 bits (456), Expect = 8e-113
Identities = 326/390 (84%), Gaps = 1/390 (0%)
Strand=Plus/Minus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 3807 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTATCCGGATTTA 3748
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
||||||||||| | ||| ||| ||||| ||||| || || ||||||| ||||| |||
Sbjct 3747 TTGGGCGTAAAGCGAGCGCAGGCGGTTTAGAAAGTCTGAAGTTAAAGGCTGTGGCTTAAC 3688
Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198
| | | |||||| |||||||| || |||||||| ||||| ||||||||||| |
Sbjct 3687 CATAGTA-TGCTTTGGAAACTGCTAAACTTGAGTGCAGAAGGGGGGAGTGGAATTCCATG 3629
Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258
|||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||
Sbjct 3628 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCGGTGGCGAAAGCGGCTCTCTGGT 3569
Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 3568 CTGTAACTGACGCTGAGGCTCGAAAGCGTGGGTAGCGAACAGGATTAGATACCCTGGTAG 3509
Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGC 378
||||||||||||||||||| | |||||||| || | || | | |||||| |||
Sbjct 3508 TCCACGCCGTAAACGATGAGTGCTAGGTGTTAGGCCCTATCCGGGGCTTAGTGCCGTAGC 3449
Query 379 AAACGCAATAAGTATTCCACCTGGGGAGTA 408
||||||||||| | ||| |||||||||||
Sbjct 3448 TAACGCAATAAGCACTCCGCCTGGGGAGTA 3419
>seq2498
Length=5872
Score = 306 bits (338), Expect = 9e-81
Identities = 312/401 (78%), Gaps = 11/401 (3%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 827 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 886
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||||||||||||||||| | ||| || |||| |||||||||| |||||| | |
Sbjct 887 GAATTACTGGGCGTAAAGCGAGCGCAGACGGTTATTTAAGTCAGATGTGAAATCCCCGAG 946
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAG--TGCAGGAGGGGCAAGTGGA 190
|| ||| || ||||| |||||||||| |||||| || | ||| || || ||
Sbjct 947 CTTAACTTGGGAACTGCGTTTGAAACTGGGTAACTAGAGTATGTAAGAGAGG--GGTAGA 1004
Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG- 249
||||| ||||||| |||||||||||||| || ||| ||| ||| |||||||||| |
Sbjct 1005 ATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAAGAATACCGATGGCGAAGGCAGC 1064
Query 250 --CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307
|||| |||| | |||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1065 CCCTTG--GGACAAT-ACTGACGTTCATGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 1121
Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCC 367
||||||||||||||||||| ||||||||| | ||| ||| ||||| | | || | |
Sbjct 1122 TACCCTGGTAGTCCACGCCCTAAACGATGTCAATTAGCTGTTGGGGCAC-GAGATGTTTC 1180
Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
|| || ||| ||||| || | || |||||||||||
Sbjct 1181 AGTAGCGAAGCTAACGCGTGAAATTGACCGCCTGGGGAGTA 1221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203094503424
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |