Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4146 412 8e-113 seq2498 306 9e-81 >seq4146 Length=3813 Score = 412 bits (456), Expect = 8e-113 Identities = 326/390 (84%), Gaps = 1/390 (0%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| Sbjct 3807 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTCCCGAGCGTTATCCGGATTTA 3748 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| | ||| ||| ||||| ||||| || || ||||||| ||||| ||| Sbjct 3747 TTGGGCGTAAAGCGAGCGCAGGCGGTTTAGAAAGTCTGAAGTTAAAGGCTGTGGCTTAAC 3688 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 | | | |||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct 3687 CATAGTA-TGCTTTGGAAACTGCTAAACTTGAGTGCAGAAGGGGGGAGTGGAATTCCATG 3629 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 |||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||| Sbjct 3628 TGTAGCGGTGAAATGCGTAGATATATGGAGGAACACCGGTGGCGAAAGCGGCTCTCTGGT 3569 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 3568 CTGTAACTGACGCTGAGGCTCGAAAGCGTGGGTAGCGAACAGGATTAGATACCCTGGTAG 3509 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGC 378 ||||||||||||||||||| | |||||||| || | || | | |||||| ||| Sbjct 3508 TCCACGCCGTAAACGATGAGTGCTAGGTGTTAGGCCCTATCCGGGGCTTAGTGCCGTAGC 3449 Query 379 AAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||||||||| | ||| ||||||||||| Sbjct 3448 TAACGCAATAAGCACTCCGCCTGGGGAGTA 3419 >seq2498 Length=5872 Score = 306 bits (338), Expect = 9e-81 Identities = 312/401 (78%), Gaps = 11/401 (3%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 827 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTAATCG 886 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| | ||| || |||| |||||||||| |||||| | | Sbjct 887 GAATTACTGGGCGTAAAGCGAGCGCAGACGGTTATTTAAGTCAGATGTGAAATCCCCGAG 946 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAG--TGCAGGAGGGGCAAGTGGA 190 || ||| || ||||| |||||||||| |||||| || | ||| || || || Sbjct 947 CTTAACTTGGGAACTGCGTTTGAAACTGGGTAACTAGAGTATGTAAGAGAGG--GGTAGA 1004 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG- 249 ||||| ||||||| |||||||||||||| || ||| ||| ||| |||||||||| | Sbjct 1005 ATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAAGAATACCGATGGCGAAGGCAGC 1064 Query 250 --CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 |||| |||| | |||||| | | |||||||||||||||||||||||||||||||| Sbjct 1065 CCCTTG--GGACAAT-ACTGACGTTCATGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 1121 Query 308 TACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCC 367 ||||||||||||||||||| ||||||||| | ||| ||| ||||| | | || | | Sbjct 1122 TACCCTGGTAGTCCACGCCCTAAACGATGTCAATTAGCTGTTGGGGCAC-GAGATGTTTC 1180 Query 368 GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || || ||| ||||| || | || ||||||||||| Sbjct 1181 AGTAGCGAAGCTAACGCGTGAAATTGACCGCCTGGGGAGTA 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203094503424