Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq121 154 3e-35
seq43 143 5e-32
seq263 138 2e-30
seq5 122 2e-25
seq45 102 2e-19
seq61 93.3 8e-17
seq357 77.0 6e-12
>seq121
Length=10290576
Score = 154 bits (170), Expect = 3e-35
Identities = 178/236 (75%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 9817107 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 9817164
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| |||| ||||||||||||||||||| | || || || | |
Sbjct 9817165 ATGCCCTTAGATGTCTGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 9817224
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | | ||||
Sbjct 9817225 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 9817284
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||||||| | | | ||| |||||| || |||||| ||| ||||| ||| |||||
Sbjct 9817285 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTT 9817340
>seq43
Length=20637118
Score = 143 bits (158), Expect = 5e-32
Identities = 163/215 (76%), Gaps = 3/215 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || | ||||| ||||||||||||||||
Sbjct 20627069 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 20627126
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| ||||||||||||||||||| | || || || | |
Sbjct 20627127 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 20627186
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| ||||| ||| |||||| | | || | | ||||| ||||||| | ||||
Sbjct 20627187 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGAGATTG 20627246
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
|||||||| | | | |||||||||| || ||||||
Sbjct 20627247 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 20627281
>seq263
Length=3790467
Score = 138 bits (152), Expect = 2e-30
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 148 GGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCT 207
|||| ||||||||||||||||||| | || || || | | ||| ||||| |||
Sbjct 2875095 GGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGC 2875154
Query 208 GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267
|||||| | | || | | ||||| ||||||| | | |||||||||||| | | | ||
Sbjct 2875155 GGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAA 2875214
Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327
|||||||| || |||||| ||| ||||| ||| |||||||||| |||||||||||||||
Sbjct 2875215 CGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGT 2875274
Query 328 A 328
|
Sbjct 2875275 A 2875275
>seq5
Length=38686854
Score = 122 bits (134), Expect = 2e-25
Identities = 129/169 (76%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||
Sbjct 22677133 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 22677075
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
||| || | || || || | | ||| || || ||| |||||| | | || |
Sbjct 22677074 ACTAACTGGTTCAGCGTGTGCCTACCCTATGCTGGCAGGCGCGGGTAACCCATTGAACCC 22677015
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274
| ||||| ||||||||| | ||||||||||| | | | |||||||||
Sbjct 22677014 CATTCGTGATGGGGATAGGGGGTTGCAATTATTCCCCATGAACGAGGAA 22676966
Score = 80.6 bits (88), Expect = 5e-13
Identities = 172/251 (69%), Gaps = 7/251 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
|||||||||||| | | || ||| | || || |||| ||| |||| |||| ||
Sbjct 15010643 CTTCTTAGAGGGCCAAGTGGTTCAGCCACCTG--AGATTGAA-CAAAAACAAGTCTACGA 15010587
Query 132 TGCCCTTAGATGTTCTGGGCC--GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189
|||||||||||| |||||| | |||| | | ||||||| | | | | || | |
Sbjct 15010586 TGCCCTTAGATG-TCTGGGACTTGCACACATGTTACACTGGCTGGCTGAGCATGTGCCTA 15010528
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249
||| |||| |||| |||| | || | | || | | || || |||||| | |||
Sbjct 15010527 TCCTAGGCCCACAGGTGTGGGCAGTCAT-TGAACCACATTCATGATGGGGACCAGGGATT 15010469
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
||||||| | | | | ||| ||| || || |||||| || ||||| ||| | ||||||
Sbjct 15010468 GCAATTACTTCCCATGAACAAGGCATTCCCAGTAAGTGCAGGTCATAAGCTTGTGTTGAT 15010409
Query 310 TACGTCCCTGC 320
|| || |||||
Sbjct 15010408 TATGTTCCTGC 15010398
>seq45
Length=19174779
Score = 102 bits (112), Expect = 2e-19
Identities = 139/190 (73%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||| ||||||||||||||||||| |||| ||| | || |||
Sbjct 11319678 AGATTGAG-CAATAACAGGACTGTGATGCCCTTAGATGTCTGGGGCTGCATGTACGTTAC 11319736
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA-TCTTGTTAAAC 224
|||||| | || || || | ||| | | |||| ||||||| || | | || |
Sbjct 11319737 ACTGACTGGCTCAGCGTGTGTCTACCCTACACTGTCAGGTGTGGGTAAGTCGT-TGAACC 11319795
Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284
| ||||| |||| || | |||||||||||||| | | |||||||||| || |||||
Sbjct 11319796 CCATTCGTGATGGGAATCAGGAATTGCAATTATTGCCCATGAACGAGGAATTCCCAGTAA 11319855
Query 285 GCGCGTGTCA 294
| | | ||||
Sbjct 11319856 GTGTGGGTCA 11319865
>seq61
Length=17507673
Score = 93.3 bits (102), Expect = 8e-17
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 113 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171
|||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 11222199 GGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 11222141
>seq357
Length=1990190
Score = 77.0 bits (84), Expect = 6e-12
Identities = 173/259 (67%), Gaps = 27/259 (10%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| || || | |||||| || |||||||
Sbjct 1589722 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATT--AAGCAATAGCACGTCTGTG 1589665
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||| |||||||| |||||| ||||||||| | || || || | |
Sbjct 1589664 GTGCCATTAGATGTCCTGGGC-----------TACACTGACTGGCTCAGCGTGTGCCTAT 1589616
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249
||| || | ||| ||||||| || ||| ||| | | |||| ||||||| | | |||
Sbjct 1589615 CCTACTCCAGCAGGCGTGGGTAA-CTCGTTGAACCCCATTCGTGATGGGGATGGGGGATT 1589557
Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309
| |||||| | | | ||| |||| || | ||| | ||| | ||||||
Sbjct 1589556 GAAATTATAACCCATGAACAAGGAGTGT-----------GGGTCCTAAGCTTGTGTTGAT 1589508
Query 310 TACGTCCCTGCCCTTTGTA 328
|| ||||||||||||||||
Sbjct 1589507 TAAGTCCCTGCCCTTTGTA 1589489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947116949504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |