Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq121 154 3e-35 seq43 143 5e-32 seq263 138 2e-30 seq5 122 2e-25 seq45 102 2e-19 seq61 93.3 8e-17 seq357 77.0 6e-12 >seq121 Length=10290576 Score = 154 bits (170), Expect = 3e-35 Identities = 178/236 (75%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 9817107 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 9817164 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| ||||||||||||||||||| | || || || | | Sbjct 9817165 ATGCCCTTAGATGTCTGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 9817224 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 9817225 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 9817284 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||| | | | ||| |||||| || |||||| ||| ||||| ||| ||||| Sbjct 9817285 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTT 9817340 >seq43 Length=20637118 Score = 143 bits (158), Expect = 5e-32 Identities = 163/215 (76%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 20627069 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 20627126 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 20627127 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 20627186 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | |||| Sbjct 20627187 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGAGATTG 20627246 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 |||||||| | | | |||||||||| || |||||| Sbjct 20627247 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAG 20627281 >seq263 Length=3790467 Score = 138 bits (152), Expect = 2e-30 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 148 GGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCT 207 |||| ||||||||||||||||||| | || || || | | ||| ||||| ||| Sbjct 2875095 GGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGC 2875154 Query 208 GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 |||||| | | || | | ||||| ||||||| | | |||||||||||| | | | || Sbjct 2875155 GGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAA 2875214 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 |||||||| || |||||| ||| ||||| ||| |||||||||| ||||||||||||||| Sbjct 2875215 CGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGT 2875274 Query 328 A 328 | Sbjct 2875275 A 2875275 >seq5 Length=38686854 Score = 122 bits (134), Expect = 2e-25 Identities = 129/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 22677133 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 22677075 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| || | || || || | | ||| || || ||| |||||| | | || | Sbjct 22677074 ACTAACTGGTTCAGCGTGTGCCTACCCTATGCTGGCAGGCGCGGGTAACCCATTGAACCC 22677015 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 | ||||| ||||||||| | ||||||||||| | | | ||||||||| Sbjct 22677014 CATTCGTGATGGGGATAGGGGGTTGCAATTATTCCCCATGAACGAGGAA 22676966 Score = 80.6 bits (88), Expect = 5e-13 Identities = 172/251 (69%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||| | | || ||| | || || |||| ||| |||| |||| || Sbjct 15010643 CTTCTTAGAGGGCCAAGTGGTTCAGCCACCTG--AGATTGAA-CAAAAACAAGTCTACGA 15010587 Query 132 TGCCCTTAGATGTTCTGGGCC--GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||| |||||| | |||| | | ||||||| | | | | || | | Sbjct 15010586 TGCCCTTAGATG-TCTGGGACTTGCACACATGTTACACTGGCTGGCTGAGCATGTGCCTA 15010528 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| |||| |||| | || | | || | | || || |||||| | ||| Sbjct 15010527 TCCTAGGCCCACAGGTGTGGGCAGTCAT-TGAACCACATTCATGATGGGGACCAGGGATT 15010469 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||| | | | | ||| ||| || || |||||| || ||||| ||| | |||||| Sbjct 15010468 GCAATTACTTCCCATGAACAAGGCATTCCCAGTAAGTGCAGGTCATAAGCTTGTGTTGAT 15010409 Query 310 TACGTCCCTGC 320 || || ||||| Sbjct 15010408 TATGTTCCTGC 15010398 >seq45 Length=19174779 Score = 102 bits (112), Expect = 2e-19 Identities = 139/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||| ||||||||||||||||||| |||| ||| | || ||| Sbjct 11319678 AGATTGAG-CAATAACAGGACTGTGATGCCCTTAGATGTCTGGGGCTGCATGTACGTTAC 11319736 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA-TCTTGTTAAAC 224 |||||| | || || || | ||| | | |||| ||||||| || | | || | Sbjct 11319737 ACTGACTGGCTCAGCGTGTGTCTACCCTACACTGTCAGGTGTGGGTAAGTCGT-TGAACC 11319795 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAA 284 | ||||| |||| || | |||||||||||||| | | |||||||||| || ||||| Sbjct 11319796 CCATTCGTGATGGGAATCAGGAATTGCAATTATTGCCCATGAACGAGGAATTCCCAGTAA 11319855 Query 285 GCGCGTGTCA 294 | | | |||| Sbjct 11319856 GTGTGGGTCA 11319865 >seq61 Length=17507673 Score = 93.3 bits (102), Expect = 8e-17 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 113 GGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| Sbjct 11222199 GGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGAC 11222141 >seq357 Length=1990190 Score = 77.0 bits (84), Expect = 6e-12 Identities = 173/259 (67%), Gaps = 27/259 (10%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || || | |||||| || ||||||| Sbjct 1589722 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATT--AAGCAATAGCACGTCTGTG 1589665 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||| |||||||| |||||| ||||||||| | || || || | | Sbjct 1589664 GTGCCATTAGATGTCCTGGGC-----------TACACTGACTGGCTCAGCGTGTGCCTAT 1589616 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| || | ||| ||||||| || ||| ||| | | |||| ||||||| | | ||| Sbjct 1589615 CCTACTCCAGCAGGCGTGGGTAA-CTCGTTGAACCCCATTCGTGATGGGGATGGGGGATT 1589557 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | |||||| | | | ||| |||| || | ||| | ||| | |||||| Sbjct 1589556 GAAATTATAACCCATGAACAAGGAGTGT-----------GGGTCCTAAGCTTGTGTTGAT 1589508 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 1589507 TAAGTCCCTGCCCTTTGTA 1589489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947116949504