Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2498 470 5e-130 seq6128 282 1e-73 >seq2498 Length=5872 Score = 470 bits (520), Expect = 5e-130 Identities = 405/495 (82%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| |||| ||||||||||||||||||||| ||||||||| |||| Sbjct 3085 CGAGTCTTAATAGGGCGTTCAGTTGCTGGGTGTAGACCCGAAACCGAGTGATCTATCCAT 3144 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || ||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||| Sbjct 3145 GGTCAGGATGAAGGTGCGGTAAAACGCACTGGAGGTCCGAACCCACGCATGTTGCAAAAT 3204 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||| |||||| |||||||||||||||||||||||| ||| ||||||||||||| Sbjct 3205 GCGGGGATGAACTGTGGATAGGGGTGAAAGGCTAAACAAACTCGGAGATAGCTGGTTCTC 3264 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||| Sbjct 3265 CCCGAAAACTATTTAGGTAGTGCCTCATGCATCACTTCTGGGGGTAAAGCACTGTTATGG 3324 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACC 300 ||||||||||||||||||||||||| |||| |||||||| |||| | ||| | | Sbjct 3325 CTAGGGGGTCATTGCGACTTACCAACCCATGGCAAACTCAGAATACCAGAAAGTGCAAGC 3384 Query 301 GCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATC 360 ||||| || |||||||||| |||| | | ||||| || || || ||| | Sbjct 3385 ATGGGAGACAGACGGTGGGTGCTAACGTCCATCGTCAAGAGGGAAACAACCCAGACCGCC 3444 Query 361 AGCTAAGGCCCCGAAATGACAG-CTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 |||||||| ||| ||||||||| ||||| | |||||||| || || ||||||| Sbjct 3445 AGCTAAGGTCCC-AAATGACAGATTAAGTGGTA--AACGAAGTGGGAAGGCACAGACAGC 3501 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||||| Sbjct 3502 CAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTCGA 3560 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 3561 GTCGTCCTGCGCGGA 3575 >seq6128 Length=1461 Score = 282 bits (312), Expect = 1e-73 Identities = 360/488 (74%), Gaps = 17/488 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||| || |||||||||||||| |||| ||||||| Sbjct 511 CGAGTCTGAATAGGGCGAAGTAGTACGAGGACATAGACCCGAAACCATGTGACCTACCCA 570 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 || |||| |||||||||||||| |||| ||||||| ||||||| | |||||||| Sbjct 571 TGAGCAGGTTGAAGGTGCGGTAAGACGCACTGGAGGACCGAACCAGGGCACGTTGAAAAG 630 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||| ||||||||| || |||| | |||| |||||||| |||||||||||| Sbjct 631 TGCTTGGATGACTTGTGGGTAGCGGAGAAATTCCAAACGAACTTGGAGATAGCTGGTTCT 690 Query 180 CTCCGAAAACTATTTAGG--TAGTGCC----TCAAGTATCACCATCGGGGGTAGAGCACT 233 |||||||| |||||| ||| | | | ||| ||| | || ||||||||||| Sbjct 691 CTCCGAAATAGCTTTAGGGCTAGCGTCGAAATGAAGAATC----TTGGAGGTAGAGCACT 746 Query 234 GTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 ||| || ||||| ||| || ||||||| | ||||||||||||| || || Sbjct 747 GTTTGGGTGAGGGGTCCATCTCGGATTACCAATCTCAGATAAACTCCGAATGC-CA-AAG 804 Query 294 TTTTACCG-CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC 352 |||| | ||| ||| || | |||||||| ||||| ||| ||| || | || Sbjct 805 ATTTATGGTCGGCAGTCAGACTGCGAGTGCTAAGATCCGTAGTCGAAAGGGAAACAGCCC 864 Query 353 GGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 ||| | ||||||||| ||| |||| | | ||||| || || || || | |||| Sbjct 865 AGACCACCAGCTAAGGTCCCAAAATAATTGTTAAGTGGAA--AAGGATGTGGGGTTGCAC 922 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||| |||||||||| |||| |||||||| ||||||| ||||||||||||| ||||||| Sbjct 923 AGACAACTAGGATGTTAGCTTAGAAGCAGCTATTCATTCAAAGAGTGCGTAATAGCTCAC 982 Query 473 TAGTCGAG 480 |||||||| Sbjct 983 TAGTCGAG 990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689451855872