Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2498 329 1e-87 seq4146 233 7e-59 >seq2498 Length=5872 Score = 329 bits (364), Expect = 1e-87 Identities = 417/568 (73%), Gaps = 29/568 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| ||||| |||| ||| || |||| | | |||| || Sbjct 4800 TCGACTTGTCGGTCTCGCAGTTAAGCTACCTTATGCCATTGCACTATCATTCCGATTTCC 4741 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||| |||||| | | |||||||||| ||||||||| | ||||||||| Sbjct 4740 GACCGGAACTAGGTAACCTTCGAACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAG 4682 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| || |||| |||| |||||| |||| ||| | ||| | ||||||| || | Sbjct 4681 TCAAACTGCCTACCATGCACGGTCCCCGACCCTGATAAGGGGTCTGGGTTAGAA--CCTC 4624 Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | | ||| |||||||||||| ||| ||||||| ||| |||| | || ||| | Sbjct 4623 AAAGTCACCAGGGTGGTATTTCAAGGACGGCTCCACAGAAACTGGCGTTTCTGCTTCAAA 4564 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | |||||||||||||||||||| | | || ||||| | |||||| ||| ||||| Sbjct 4563 GCCTCCCACCTATCCTACACAAGTGACTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTT 4504 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| || ||| | | ||||||| || | | ||| ||| | Sbjct 4503 CACGGGGTCTTTCCGTCTAGCAGCGGGGAGATTGCATCTTCACAACCATTTCAACTTCGC 4444 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | || || ||||||| || |||||||||||||||||| ||||||||||||| Sbjct 4443 TGAGTCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTAC 4384 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 4383 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCT 4324 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTC--TTAACCTTCCAGC 535 || || ||| || | ||| || || || ||||||||||||| Sbjct 4323 TCGAT---CCG-------------ATGCT-TGCACA----TCTTCAATTAACCTTCCAGC 4285 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||| || ||||| || Sbjct 4284 ACCGGGCAGGCGTCACACCCTATACGTC 4257 >seq4146 Length=3813 Score = 233 bits (258), Expect = 7e-59 Identities = 246/324 (76%), Gaps = 11/324 (3%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 |||| ||||||||| ||| |||| | ||||| ||| || ||| ||| ||| Sbjct 3 CTCCTACCTATCCTGTACATGTGGCACAGTTACTCAATATCAAACTGCAGTAAAGCTCCA 62 Query 301 -GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| ||||||| |||| | ||| ||||||| || ||||| |||||||||| Sbjct 63 TGGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCG 122 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | |||||||||| | || ||||||| ||||||| ||||||||||||||| Sbjct 123 AGTCTCTCGTTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCC 182 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 183 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 242 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 |||| || | | || ||| | |||||||||||||||||||||| Sbjct 243 AATT----------CAGATCTTCGCTTGCGCTAAACCCTCCTCTTAACCTTCCAGCACCG 292 Query 540 GGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||| || ||||| || Sbjct 293 GGCAGGCGTCACCCCCTATACATC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702250733568