Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq2498 329 1e-87
seq4146 233 7e-59
>seq2498
Length=5872
Score = 329 bits (364), Expect = 1e-87
Identities = 417/568 (73%), Gaps = 29/568 (5%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||||||| |||||||||| ||||| |||| ||| || |||| | | |||| ||
Sbjct 4800 TCGACTTGTCGGTCTCGCAGTTAAGCTACCTTATGCCATTGCACTATCATTCCGATTTCC 4741
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
||| | ||| |||||| | | |||||||||| ||||||||| | |||||||||
Sbjct 4740 GACCGGAACTAGGTAACCTTCGAACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCCAG 4682
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180
| ||||| || |||| |||| |||||| |||| ||| | ||| | ||||||| || |
Sbjct 4681 TCAAACTGCCTACCATGCACGGTCCCCGACCCTGATAAGGGGTCTGGGTTAGAA--CCTC 4624
Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238
| | ||| |||||||||||| ||| ||||||| ||| |||| | || ||| |
Sbjct 4623 AAAGTCACCAGGGTGGTATTTCAAGGACGGCTCCACAGAAACTGGCGTTTCTGCTTCAAA 4564
Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298
| |||||||||||||||||||| | | || ||||| | |||||| ||| |||||
Sbjct 4563 GCCTCCCACCTATCCTACACAAGTGACTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTT 4504
Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357
| |||||||||| |||| || ||| | | ||||||| || | | ||| ||| |
Sbjct 4503 CACGGGGTCTTTCCGTCTAGCAGCGGGGAGATTGCATCTTCACAACCATTTCAACTTCGC 4444
Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417
| | || || ||||||| || |||||||||||||||||| |||||||||||||
Sbjct 4443 TGAGTCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTAC 4384
Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 4383 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCT 4324
Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTC--TTAACCTTCCAGC 535
|| || ||| || | ||| || || || |||||||||||||
Sbjct 4323 TCGAT---CCG-------------ATGCT-TGCACA----TCTTCAATTAACCTTCCAGC 4285
Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563
||||||||||||||| || ||||| ||
Sbjct 4284 ACCGGGCAGGCGTCACACCCTATACGTC 4257
>seq4146
Length=3813
Score = 233 bits (258), Expect = 7e-59
Identities = 246/324 (76%), Gaps = 11/324 (3%)
Strand=Plus/Plus
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300
|||| ||||||||| ||| |||| | ||||| ||| || ||| ||| |||
Sbjct 3 CTCCTACCTATCCTGTACATGTGGCACAGTTACTCAATATCAAACTGCAGTAAAGCTCCA 62
Query 301 -GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| ||||||| |||| | ||| ||||||| || ||||| ||||||||||
Sbjct 63 TGGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCG 122
Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419
| || | |||||||||| | || ||||||| ||||||| |||||||||||||||
Sbjct 123 AGTCTCTCGTTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCC 182
Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 183 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 242
Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539
|||| || | | || ||| | ||||||||||||||||||||||
Sbjct 243 AATT----------CAGATCTTCGCTTGCGCTAAACCCTCCTCTTAACCTTCCAGCACCG 292
Query 540 GGCAGGCGTCAGTCCGTATACCTC 563
||||||||||| || ||||| ||
Sbjct 293 GGCAGGCGTCACCCCCTATACATC 316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702250733568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |