Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq306 104 4e-20 seq60 104 4e-20 seq107 100 5e-19 seq105 100 5e-19 seq308 95.1 2e-17 seq74 86.0 1e-14 seq458 84.2 4e-14 seq64 84.2 4e-14 seq13 84.2 4e-14 seq29 80.6 4e-13 seq20 77.0 5e-12 seq77 75.2 2e-11 seq32 73.4 6e-11 >seq306 Length=2794632 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 229296 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 229353 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 229354 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 229407 >seq60 Length=17578992 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 17431343 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 17431400 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 17431401 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17431454 >seq107 Length=12465781 Score = 100 bits (110), Expect = 5e-19 Identities = 91/112 (81%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 738167 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 738110 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 738109 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 738058 >seq105 Length=12676763 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| || | ||||| | || | || |||| || || | Sbjct 7703358 GTATGAGAGGAACCGCAGG-TTCA-AACATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 7703301 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 7703300 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 7703247 >seq308 Length=2727758 Score = 95.1 bits (104), Expect = 2e-17 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | || | | ||||| | || | || |||| || || | Sbjct 2498444 GTACGAGAGGAACCGCAGGTTT--GGAGGTTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2498501 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2498502 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2498555 >seq74 Length=15914887 Score = 86.0 bits (94), Expect = 1e-14 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 11 AACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGC 70 |||||| | |||||| | ||||| | || | || |||| || || || ||||||| Sbjct 9499186 AACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGC 9499243 Query 71 TACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 9499244 TACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 9499287 >seq458 Length=847439 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 42 GGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC 101 ||||| |||| || || || |||||||||||||||| |||||||| ||||||||||| Sbjct 637464 GGCTG-CTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTC 637406 Query 102 TAAGTCAGAATCC 114 ||||||||||||| Sbjct 637405 TAAGTCAGAATCC 637393 >seq64 Length=16039902 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 15870611 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 15870552 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 15870551 CTGAACGCCTCTAAGTCAGAATCC 15870528 >seq13 Length=33189687 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 6152914 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 6152855 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||||||||||| Sbjct 6152854 CTGAACGCCTCTAAGTCAGAATCC 6152831 >seq29 Length=23282948 Score = 80.6 bits (88), Expect = 4e-13 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| || | |||||| | ||| | | || | || |||| || |||| Sbjct 4877937 GTATGAGAGGAACTGCA-AGTTCAGAC-ATTTGATGTGTGTGCTTGACTGAGGAGCCAGT 4877994 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||| ||||||||| |||||||| ||||| ||| |||||||||||| | |||| Sbjct 4877995 GGGGCGAAGTTACCATCTGTGGGATTATGACTGAATGCCCCTAAGTCAGAATACTGGCCA 4878054 Query 121 G 121 | Sbjct 4878055 G 4878055 >seq20 Length=28179453 Score = 77.0 bits (84), Expect = 5e-12 Identities = 78/99 (79%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80 |||||| | ||||| | || | || |||| || || || |||||||||||||||| Sbjct 4535268 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 4535326 Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||| ||||| ||||||| |||||||||| |||| Sbjct 4535327 GGGATTATGACTGAATGCCTCTATGTCAGAATCC-TGCC 4535364 >seq77 Length=15139199 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| |||||||| ||||||| |||||||||||||||| Sbjct 2932755 GCGAAGCTACCATCTGTGGGATTATGACTGAACGTCTCTAAGTCAGAATCC 2932705 >seq32 Length=22489798 Score = 73.4 bits (80), Expect = 6e-11 Identities = 77/99 (78%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 2593646 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2593703 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCC 99 | | |||||||||||||| |||||||| ||||||||| Sbjct 2593704 GGGGAGAAGCTACCATCTGTGGGATTATGACTGAACGCC 2593742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819130417152