Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10]
8,768 sequences; 3,843,982,861 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq306 104 4e-20
seq60 104 4e-20
seq107 100 5e-19
seq105 100 5e-19
seq308 95.1 2e-17
seq74 86.0 1e-14
seq458 84.2 4e-14
seq64 84.2 4e-14
seq13 84.2 4e-14
seq29 80.6 4e-13
seq20 77.0 5e-12
seq77 75.2 2e-11
seq32 73.4 6e-11
>seq306
Length=2794632
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 229296 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 229353
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 229354 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 229407
>seq60
Length=17578992
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 17431343 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 17431400
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 17431401 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17431454
>seq107
Length=12465781
Score = 100 bits (110), Expect = 5e-19
Identities = 91/112 (81%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 738167 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 738110
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 738109 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAAT 738058
>seq105
Length=12676763
Score = 100 bits (110), Expect = 5e-19
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||||||| | |||| || | ||||| | || | || |||| || || |
Sbjct 7703358 GTATGAGAGGAACCGCAGG-TTCA-AACATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 7703301
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 7703300 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 7703247
>seq308
Length=2727758
Score = 95.1 bits (104), Expect = 2e-17
Identities = 90/114 (79%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | || | | ||||| | || | || |||| || || |
Sbjct 2498444 GTACGAGAGGAACCGCAGGTTT--GGAGGTTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2498501
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 2498502 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2498555
>seq74
Length=15914887
Score = 86.0 bits (94), Expect = 1e-14
Identities = 83/104 (80%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 11 AACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGC 70
|||||| | |||||| | ||||| | || | || |||| || || || |||||||
Sbjct 9499186 AACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGC 9499243
Query 71 TACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 9499244 TACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 9499287
>seq458
Length=847439
Score = 84.2 bits (92), Expect = 4e-14
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 42 GGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTC 101
||||| |||| || || || |||||||||||||||| |||||||| |||||||||||
Sbjct 637464 GGCTG-CTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTC 637406
Query 102 TAAGTCAGAATCC 114
|||||||||||||
Sbjct 637405 TAAGTCAGAATCC 637393
>seq64
Length=16039902
Score = 84.2 bits (92), Expect = 4e-14
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || || || |||||||||||||||| ||||||||
Sbjct 15870611 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 15870552
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||
Sbjct 15870551 CTGAACGCCTCTAAGTCAGAATCC 15870528
>seq13
Length=33189687
Score = 84.2 bits (92), Expect = 4e-14
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || || || |||||||||||||||| ||||||||
Sbjct 6152914 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 6152855
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
||||||||||||||||||||||||
Sbjct 6152854 CTGAACGCCTCTAAGTCAGAATCC 6152831
>seq29
Length=23282948
Score = 80.6 bits (88), Expect = 4e-13
Identities = 92/121 (76%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| || | |||||| | ||| | | || | || |||| || ||||
Sbjct 4877937 GTATGAGAGGAACTGCA-AGTTCAGAC-ATTTGATGTGTGTGCTTGACTGAGGAGCCAGT 4877994
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||| ||||||||| |||||||| ||||| ||| |||||||||||| | ||||
Sbjct 4877995 GGGGCGAAGTTACCATCTGTGGGATTATGACTGAATGCCCCTAAGTCAGAATACTGGCCA 4878054
Query 121 G 121
|
Sbjct 4878055 G 4878055
>seq20
Length=28179453
Score = 77.0 bits (84), Expect = 5e-12
Identities = 78/99 (79%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 21 TTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGC 80
|||||| | ||||| | || | || |||| || || || ||||||||||||||||
Sbjct 4535268 TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGT 4535326
Query 81 TGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
|||||||| ||||| ||||||| |||||||||| ||||
Sbjct 4535327 GGGATTATGACTGAATGCCTCTATGTCAGAATCC-TGCC 4535364
>seq77
Length=15139199
Score = 75.2 bits (82), Expect = 2e-11
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Minus
Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 2932755 GCGAAGCTACCATCTGTGGGATTATGACTGAACGTCTCTAAGTCAGAATCC 2932705
>seq32
Length=22489798
Score = 73.4 bits (80), Expect = 6e-11
Identities = 77/99 (78%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 2593646 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 2593703
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCC 99
| | |||||||||||||| |||||||| |||||||||
Sbjct 2593704 GGGGAGAAGCTACCATCTGTGGGATTATGACTGAACGCC 2593742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819130417152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |