Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq25 271 2e-70 seq43 181 3e-43 seq124 176 1e-41 seq22 172 2e-40 seq18 132 1e-28 seq217 111 5e-22 seq411 102 2e-19 seq110 98.7 3e-18 seq48 98.7 3e-18 seq496 96.9 1e-17 seq129 89.7 2e-15 seq118 89.7 2e-15 seq427 87.8 5e-15 seq98 80.6 8e-13 seq363 77.0 1e-11 seq63 75.2 3e-11 seq1 75.2 3e-11 >seq25 Length=24566998 Score = 271 bits (300), Expect = 2e-70 Identities = 203/237 (86%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || | |||||| ||||||| ||||| | |||||| ||| Sbjct 9122719 TACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTGCCT 9122778 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9122779 CCCGGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 9122838 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||| || ||| | ||||||||| Sbjct 9122839 TCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACACGTGGTCACCATGGTA 9122898 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 ||| |||||||||||||||||||||||||| || ||||| | |||||| Sbjct 9122899 GGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 9122955 >seq43 Length=20637118 Score = 181 bits (200), Expect = 3e-43 Identities = 125/140 (89%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 20627409 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 20627468 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 20627469 CCCAGGTCGGGAGTGGGTAATTTGCGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 20627528 Query 122 CTCAGGCTCCCTCTCCGGAA 141 |||||||||||||||| ||| Sbjct 20627529 CTCAGGCTCCCTCTCCAGAA 20627548 >seq124 Length=10580691 Score = 176 bits (194), Expect = 1e-41 Identities = 119/132 (90%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||| |||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 5824821 ACTCATTACAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 5824880 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5824881 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 5824940 Query 122 CTCAGGCTCCCT 133 |||||||||||| Sbjct 5824941 CTCAGGCTCCCT 5824952 >seq22 Length=26541223 Score = 172 bits (190), Expect = 2e-40 Identities = 150/184 (82%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTG--TCACTACC 59 |||||||||||||||| | | |||||||| ||| | | ||||| || |||||||| Sbjct 16432464 ACTCATTCCAATTACAGGGCTTCAAAAGAGTCCTATTTTGTTATTTTTTTCATCACTACC 16432405 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | || | || |||||||||||| | || ||||||||||||||||||||||||| | Sbjct 16432404 TCCCAGGGTTGAGAGTGGGTAATTTGCACACCAGCTGCCTTCCTTGGATGTGGTAGCCAT 16432345 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||| ||||||||| |||| ||||||| ||||||||| |||| | | || |||| Sbjct 16432344 TTCTCAGGGTCCCTCTCCAGAATTGAACCCTGATTCCCCGTCACCCATGGTCTCCGTGGT 16432285 Query 180 AGGC 183 |||| Sbjct 16432284 AGGC 16432281 >seq18 Length=31040741 Score = 132 bits (146), Expect = 1e-28 Identities = 96/110 (87%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| ||||||||||||||||||||||||||||||||||||| | | | Sbjct 23147970 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGAA 23148029 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 23148030 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 23148078 >seq217 Length=4845695 Score = 111 bits (122), Expect = 5e-22 Identities = 125/165 (76%), Gaps = 7/165 (4%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-----AGGTACT-ATCAAA 398 || || ||||||||||||||||||| |||||||| || | || | | | |||| Sbjct 4792132 CAAGTGTTAGCTCTAGAATTACCACAGTTATCCAAAAAGGAGAGGGAGCCAGTGACCAAA 4792073 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| |||||||||||||||||||| ||| |||||||||| | | |||| ||| Sbjct 4792072 GGAACTGAAACTGATTTAATGAGCCATTTGCATTTTCACTGTACTGGCTCTGTATAATTA 4792013 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||| ||| ||||||||||||||||| ||||| |||||| || Sbjct 4792012 CACATATATGAATTAATCTTTGAGACAAGTATATG-CTACTGACA 4791969 >seq411 Length=1305653 Score = 102 bits (112), Expect = 2e-19 Identities = 126/166 (76%), Gaps = 10/166 (6%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGT----AAGGTACT-ATCAAAT 399 ||| ||||| ||||||||||||||| |||| | | ||||| ||| | | | |||| Sbjct 348152 CATATATTATCTCTAGAATTACCACAGTTAACAAAGTAGTCAAGAAGCCAGTGACCAAAG 348211 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC-TTA 458 ||| | || |||||||||||||||| ||||| ||||||| | | | | | ||| Sbjct 348212 GAACAA-AATGGATTTAATGAGCCATTAGCAGTGCCACTGTACTGGC--CCTGTGCATTA 348268 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||| |||| |||| ||||||| || Sbjct 348269 GACATGCATGGCTTAGCCTTTGAGATAAGCGTATG-CTACTGGTAG 348313 >seq110 Length=12197893 Score = 98.7 bits (108), Expect = 3e-18 Identities = 88/107 (82%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT--ATA 454 ||| | | |||||||||||||||||||||| | |||||||| |||| | ||| || Sbjct 2559781 AATGATCCATAACTGATTTAATGAGCCATTTGTAGTTTCAC--TATACCTGCCTTTCGTA 2559838 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGG 501 ||||||| ||||||||||||||||||||||| |||| |||||||| Sbjct 2559839 ATTAGACACGCATGGCTTAATCTTTGAGACAAATATAT-ACTACTGG 2559884 >seq48 Length=18110590 Score = 98.7 bits (108), Expect = 3e-18 Identities = 127/167 (76%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AGGTACTATCAAATAAA 402 ||||||||| || ||| |||||| || |||| ||| || | || || | ||| || Sbjct 3275 GCATGTATTGGCCCTAAAATTACTACAGTTAACCAATTAAGAGAGAAACCAGCAACCAAG 3334 Query 403 CGA---TA-ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA-TACTT 457 | | || | ||||||||| || ||||| |||||||||| || | || | ||||| Sbjct 3335 CAAACCTACAGTGATTTAATAAGTCATTCTCAGTTTCACTCTACTGGCA-CTGAGTACTT 3393 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||| ||||| ||||||||| |||||||||| Sbjct 3394 AGACATGCATGGCTTAATC--TGAGATAAGCATATG-CTACTGGCAG 3437 >seq496 Length=575732 Score = 96.9 bits (106), Expect = 1e-17 Identities = 116/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG----TAAG-GTACTATCAAAT 399 ||||||||||||||||||||| ||| |||||||| ||| ||| | | |||| Sbjct 533908 CATGTATTAGCTCTAGAATTATCACAGTTATCCAAATAGGCGAGAAGCCAAAGACCAAAG 533849 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| | |||||||||||||| ||||| || ||||||| | || | | || |||| Sbjct 533848 GAACCAAAACTGATTTAATGATCCATTTACA-ATTCACTGGACAGGCTCTGTGTAATTAG 533790 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 ||||||| || |||||||| ||||||| | |||| Sbjct 533789 ACATGCACGGATTAATCTTGGAGACAAAGAGATGA 533755 Score = 78.8 bits (86), Expect = 3e-12 Identities = 123/174 (71%), Gaps = 13/174 (7%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||||| || | |||||| ||||| | | ||||| ||||| Sbjct 534756 ACTCATTCCAATTACAAGGCCTCCAAAGAGTCCTGTTTTA----TTATTTTCACT----- 534706 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | ||| || | ||||| |||| | ||||| ||| |||||||| ||||| | || Sbjct 534705 --TGGGTCAGGTGTAGGTAAGTTGCACCTCTGCTAATTTCTTTGGATGTAGTAGCTG-TT 534649 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCA 175 | ||| |||||||| | | | ||| || |||||| | |||| || | |||| Sbjct 534648 CCAAGGTTCCCTCTCTGATAGCCAACTCTCATTCCCTGCCACCCCTTCACACCA 534595 >seq129 Length=9290576 Score = 89.7 bits (98), Expect = 2e-15 Identities = 148/206 (72%), Gaps = 12/206 (6%) Strand=Plus/Minus Query 301 tttttATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGC-ATGTATTAGCTCTA 359 |||| |||| |||||| ||| | ||||| |||| || ||| | || ||| ||||| Sbjct 8286521 TTTTGATCTGATAAATGCACACATTCCGGCAAAGGGGATT--AGCCACGTGTTAACTCTA 8286464 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 ||| |||||| || | ||| |||| | | | | |||| ||| || ||| ||| ||| Sbjct 8286463 GAACTACCACAGTCACCCAAGTAGGAGAGGAG-ACCAAAGGAACCGTAGCTGCTTTCATG 8286405 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTAT-ACTTAGACATGCATGGCTTAATCTT 478 || | ||||||| ||||||| | || || | ||||||||| ||| || | | Sbjct 8286404 AGTCGTTCGCAGCTTCACTGGACAGGCC-CTGAGCACTTAGACA-----GGCCTAGTTTC 8286351 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||| Sbjct 8286350 TGAGACAAGCATATG-CTACTGGCAG 8286326 >seq118 Length=10455207 Score = 89.7 bits (98), Expect = 2e-15 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||| Sbjct 9005379 TACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCT 9005320 Query 61 CCCCGTGTCGGGATTGGGTAATTT 84 ||||| ||||||| ||||||| || Sbjct 9005319 CCCCGGGTCGGGAGTGGGTAAGTT 9005296 >seq427 Length=1103182 Score = 87.8 bits (96), Expect = 5e-15 Identities = 114/155 (74%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAG----TAAG-GTACTATCAAAT 399 ||||||||||||||||||||| || |||||||| ||| ||| | | |||| Sbjct 1094857 CATGTATTAGCTCTAGAATTATTACAGTTATCCAAATAGGCGAGAAGCCAAAGACCAAAG 1094798 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 ||| | |||||||||||||| ||||| || ||||||| | || | | || |||| Sbjct 1094797 TAACCAAAACTGATTTAATGATCCATTTACA-ATTCACTGGACAGGCTCTGTGTAATTAG 1094739 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 ||||||| || |||||| | ||||||| | |||| Sbjct 1094738 ACATGCACGGATTAATCCTGGAGACAAAGAGATGA 1094704 >seq98 Length=13236748 Score = 80.6 bits (88), Expect = 8e-13 Identities = 67/82 (82%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 97 CCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCC 156 |||||||||||||||||||| |||||| | ||| |||||| ||||| |||||| ||||| Sbjct 9082636 CCTTCCTTGGATGTGGTAGCTGTTTCTGATGCTTCCTCTCTGGAATAGAACCCCGATTCC 9082695 Query 157 CCGTTACCCGTTGATACCATGG 178 || | | | || | ||||||| Sbjct 9082696 CCATCAACTGTGGTCACCATGG 9082717 >seq363 Length=1954333 Score = 77.0 bits (84), Expect = 1e-11 Identities = 59/70 (84%), Gaps = 4/70 (6%) Strand=Plus/Plus Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 ||| ||||||||||||||||||||||| |||||||||||| | || | | |||||| Sbjct 59417 AACCATAACTGATTTAATGAGCCATTCACAGTTTCACTGT----ACTGGCTGTGCTTAGA 59472 Query 461 CATGCATGGC 470 |||||||||| Sbjct 59473 CATGCATGGC 59482 >seq63 Length=16905340 Score = 75.2 bits (82), Expect = 3e-11 Identities = 63/75 (84%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 430 AGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCA 489 |||||||||||| | | |||||||||||| |||||||||||||||||||||||| Sbjct 5021638 AGTTTCACTGTAGCAGCCGTGTGTACTTAGACATGTATGGCTTAATCTTTGAGACAAGCA 5021579 Query 490 TATGACTACT-GGCA 503 |||| ||||| |||| Sbjct 5021578 TATG-CTACTAGGCA 5021565 >seq1 Length=49259779 Score = 75.2 bits (82), Expect = 3e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||| || ||||||||| ||||||||| |||||| | |||||||||||| || Sbjct 14970068 TCTCGGGCATCGAACCCCGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACT 14970009 Query 193 ACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || | |||||||||||| |||||| || ||||| Sbjct 14970008 ACTACCGAAAGTTGATATGGCAGACGTTCGAATG 14969975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510267568128