Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elephantulus_20edwardii_20[refseq_20GCF_5F000299155.1_202012-10-10] 8,768 sequences; 3,843,982,861 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq202 96.9 3e-15 seq44 93.3 3e-14 >seq202 Length=5697000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||||||| || ||||| ||||| | ||||| || |||||||| ||||| || | Sbjct 3883099 TGGAACGTTTCAGTCAAGAGGTCCAAGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 3883158 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || || |||||||| ||||| || ||||||||| | || || ||||| || ||||| | Sbjct 3883159 TTCTTATCGAGAATGTTCACTCAGAAATGTACAGTTTGCTAATAGATACTTATATCAGAG 3883218 Query 61376 A 61376 | Sbjct 3883219 A 3883219 >seq44 Length=20396770 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || | ||| ||||| || || ||||| || || |||| || || || Sbjct 12614725 GGTATACTCCACTACTTCTGTGCATAGGTTGCTGCATTTGATTGTTCCCAGGTTTTGCTG 12614784 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 |||||||| ||||| || | ||| ||||| | |||||| || || || ||||| || Sbjct 12614785 GTTACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTG 12614844 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||| || | |||||| Sbjct 12614845 AGACTCAATGATAGCATACCAAAG 12614868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397525515883520