Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq306 143 4e-32 seq24 129 9e-28 seq86 113 7e-23 >seq306 Length=129866 Score = 143 bits (158), Expect = 4e-32 Identities = 177/233 (76%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| || || ||| ||| ||||| ||||| ||| |||||| ||| ||| Sbjct 738 GTACAAAGGGCAGG-ACTTAATCA-CGCAAGCTT-ATGACCCGCACTTACTGGGA--TTC 792 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | | || ||||||| | | ||||||||||||| |||| | ||| Sbjct 793 CTCGTTCATGGGGAATAATTGCA-TCCCCGATCCCCATCACGAATGGGGTTCACGGGTTA 851 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||| |||| |||| ||| | || || ||| |||||||||||||||||| | Sbjct 852 CCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAG 911 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| || ||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 912 CCCGGA-CATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 962 >seq24 Length=42784276 Score = 129 bits (142), Expect = 9e-28 Identities = 172/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||||| || ||||||| || || ||||| ||| |||||| |||||| | Sbjct 36806096 GTACAAAGTGCAGGGACTTAATCAACGCAAGGTT-ATGACCCGCACTTACTGGGAATT-C 36806153 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 | | |||| | || ||||||||| | |||||||||||| ||| || | | || Sbjct 36806154 CGCATTGATGGTGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGGGTT 36806213 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| | | ||| | || | ||| |||||||||| |||||| Sbjct 36806214 ACCCACACCTGCCCACGTAGGACAGGCACATGCTGAGCCAGGCAGTGTAGCGTGCGTGCA 36806273 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | ||||||||||||||||| ||||||||| || ||||| || ||||| Sbjct 36806274 GCCCCGGACATCTAAGGGCATCACGGACCTGTTACTG-CTCAATCTCAGGTGGC 36806326 >seq86 Length=7055517 Score = 113 bits (124), Expect = 7e-23 Identities = 177/242 (73%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| || ||||||| ||||| | || ||| |||||| ||||| | Sbjct 4112715 GTACAAAGGGCAGGGAATTAATCAACGCAAGCTT-ACAACCCGCACTTACTGAGAATT-C 4112658 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||||||| | || |||||||||| ||||||| || Sbjct 4112657 CTCATTCATGGGGAATAATTGCAATCCCCGATTCCCATCACGAATGGGGTTCAAAGGGTT 4112598 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGT--TGAATACATCAGTGTAGCGCGCGTG 177 ||||| |||| || || ||| | | | | || |||||||||||| | || Sbjct 4112597 ACCCGAGCCTGCTGGTGTAGAG--TAGGCACATCCTCAACCAGTCAGTGTAGCGCCCATG 4112540 Query 178 CGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 | | |||||| |||||||| |||||||||||||||||||| ||||| || |||| ||| Sbjct 4112539 CAGTCCCAGA-CATCTAAGAGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGG-CTA 4112483 Query 237 AA 238 || Sbjct 4112482 AA 4112481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751982865680