Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq306 114 2e-23 seq2 100 5e-19 seq13 84.2 4e-14 seq41 78.8 2e-12 seq63 75.2 2e-11 seq14 75.2 2e-11 seq36 73.4 7e-11 >seq306 Length=129866 Score = 114 bits (126), Expect = 2e-23 Identities = 200/276 (72%), Gaps = 14/276 (5%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| ||| |||| ||| || ||| | ||||||| |||||||||||||||| Sbjct 1637 ATGCTCTTAGCTGAGTGT-CCGCGGGGCCGAAGCGTTTACTT-GAAAAAATTAGAGTGT- 1581 Query 99 CAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| || | |||| ||| |||||||| || |||||| |||||| Sbjct 1580 CAAAGCAGGCCCGAGCCGCTGGATACCGCAGCTAGGAATAATGGA-TAGGACC-GCGGTT 1523 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||||||||||||| | || | | |||||| | ||||| | ||||| || || Sbjct 1522 CTATTTTGTTGGTTTC-GGAACTGAGGCCATGATT-AGAGGGACGGCCGGGGCATTC-GT 1466 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | ||| |||||||||||||| ||||| || | |||||||| || Sbjct 1465 ATTGCGCCGCTAGA-GTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATT 1407 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||| Sbjct 1406 -GCCAAGAATGTTTTCATTAATCA--AGACGAAAGT 1374 >seq2 Length=111286942 Score = 100 bits (110), Expect = 5e-19 Identities = 182/259 (70%), Gaps = 13/259 (5%) Strand=Plus/Plus Query 49 CTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG 107 ||| || | ||| || ||| | | | ||||||||||||||||| ||||| ||| |||| Sbjct 70810964 CTGAGTCTCCCGAGGGGCCTGAAGTGTTTACTTTGAAAAAATTCAAGTGTCTAAAACAGG 70811023 Query 108 CC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 || |||| | |||| ||| |||||||| ||||||||| || ||||||||||| Sbjct 70811024 CCCAAGTTGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCAGTTCTATTTTG 70811082 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATT---CA 221 ||| |||| | || | | | |||||| ||||| | | |||| | |||| | Sbjct 70811083 TTGTTTTC-GGAACTGAGGCCACGATTAAGAGGGACGGGCAGGGGCATTCATATTGCGCC 70811141 Query 222 ATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCA 281 | | |||||||||||||||||| |||| || | || ||| | || ||| Sbjct 70811142 ACT---AGAGGTGAAATTCTTGGACCAGCACAAGATGGACCAGAGC-AAACCATTTGCCA 70811197 Query 282 AGGATGTTTTCATTAATCA 300 || |||||||||||||||| Sbjct 70811198 AGAATGTTTTCATTAATCA 70811216 >seq13 Length=65937429 Score = 84.2 bits (92), Expect = 4e-14 Identities = 169/246 (69%), Gaps = 21/246 (9%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAA--TTAGAGTGTTCAAAGCAGGCCTTTGCTCGA--ATACATTAGCA 129 ||||||||||||||| ||||| |||| ||||||||| ||| | |||| ||| Sbjct 17509560 TTTACTTTGAAAAAAAATTAGAATGTTTAAAGCAGGCTCAAGCTGCAGGATACTGGAGCT 17509501 Query 130 TGGAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||| ||||||||| | | | |||| |||| | ||||||| | || | | ||| Sbjct 17509500 AAAAATATGAGAATAGGATCCTTTGTTTCTGTTTTTTAGGTTTCTGGAACTGAAGCCATG 17509441 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCA---GAGGTGAAATTCTTGGA 245 ||||| |||| ||| | |||||| || || ||| ||||||||||| | Sbjct 17509440 ATTAAGAGGG---------GGTATTAGTATTG---TGCCACTAGAGTTGAAATTCTTGAA 17509393 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| |||| || || || | ||| || || ||| |||||||||||||| | ||| Sbjct 17509392 ACTATGCAAGATGGACCACAGCAAGAGCATTTACAAAGAATGTTTTCATTAATTA-AGAA 17509334 Query 306 CGAAAG 311 ||||| Sbjct 17509333 TGAAAG 17509328 >seq41 Length=21088812 Score = 78.8 bits (86), Expect = 2e-12 Identities = 163/237 (69%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 83 AAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATA 139 |||||| | ||||||||||||||||| ||| | ||| ||| |||||||| Sbjct 15643053 AAAAAACTGCAGTGTTCAAAGCAGGCCCGAGCTGCCTGGATAACACAGCTAGGAATAATG 15643112 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||| ||| | | ||||| |||||||||||| || | | | |||||| | ||||| Sbjct 15643113 AAATAAGAC-TCCTGTTCTGTTTTGTTGGTTTTCAGAAGTGAGGCCATGATTCAGAGGGA 15643171 Query 200 TAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | | | ||| ||| | || | | | |||| ||||||||||| | | ||||| Sbjct 15643172 TGGCCAAGGGCACTCA-TCTTGAGTCGCTGGAGGCTAAATTCTTGGACTGACACAAGACA 15643230 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAG 315 || | |||||| | ||||| |||||||||||||||| ||| ||||| || Sbjct 15643231 GACCAAAATGAAAGCAATGGCCAAGAATGTTTTCATTAATCA-AGAAGAAAAGTCAG 15643286 >seq63 Length=13396845 Score = 75.2 bits (82), Expect = 2e-11 Identities = 77/100 (77%), Gaps = 13/100 (13%) Strand=Plus/Minus Query 71 ACTT-TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCA 129 |||| ||||||||||||||||||||||||||||||||||| ||| || Sbjct 13309440 ACTTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCT-----------GCC 13309392 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT 169 |||||||| |||||| | |||||| |||||||||||| Sbjct 13309391 GGGAATAATGGAATAGCA-TCGCGGTTGTATTTTGTTGGT 13309353 >seq14 Length=62548349 Score = 75.2 bits (82), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 6/108 (6%) Strand=Plus/Plus Query 74 TTTACTTTGAA-AAAATTAGAGTGTTCAAAGCAGGCCT---TTGCTCGAATACATTAGCA 129 ||||||| ||| |||||||||||||||||||||||||| || | |||| ||| Sbjct 57332140 TTTACTTCGAACAAAATTAGAGTGTTCAAAGCAGGCCTGAGCCGCCTGGATACCACAGCT 57332199 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA 177 |||||||||||||||||| | ||||| | ||||| ||| ||||| Sbjct 57332200 AGGAATAATAGAATAGGAC-TATAGTTCTGTCTTGTTCATTT-TAGGA 57332245 >seq36 Length=24493012 Score = 73.4 bits (80), Expect = 7e-11 Identities = 74/97 (76%), Gaps = 12/97 (12%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132 |||||||||| |||||||||||||||||||||||||| ||| || || Sbjct 45085 TTTTACTTTGGAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCT-----------GCCGGG 45037 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGT 169 |||||| |||||| | |||||| |||||||||||| Sbjct 45036 AATAATGGAATAGCA-TCGCGGTTGTATTTTGTTGGT 45001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915178474496