Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq40 132 2e-28 seq82 105 3e-20 seq3 105 3e-20 seq70 100 1e-18 seq15 100 1e-18 seq12 96.9 1e-17 seq23 95.1 5e-17 seq14 84.2 9e-14 seq16 78.8 4e-12 seq55 77.0 1e-11 seq6 77.0 1e-11 >seq40 Length=22139007 Score = 132 bits (146), Expect = 2e-28 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||||| |||| |||||||||||||||||||||||||||| |||| ||| Sbjct 21875037 GAGCATGAGCATACGTGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAG 21875096 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || ||||| ||| | ||||||| | ||||| | Sbjct 21875097 CCAGAGGAAACTCTGGTGGAGGTCCGTGGCGGTCCTGACATGCAAATTGGTCGTCCGACC 21875156 Query 669 TGGGTATAGGG 679 ||||||||||| Sbjct 21875157 TGGGTATAGGG 21875167 >seq82 Length=7794654 Score = 105 bits (116), Expect = 3e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || |||||| ||||||||||||||| |||||| |||| ||||||||||||||||||||| Sbjct 7075388 TTAGGACCCAAAAGATGGTGAACTACGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGT 7075329 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| | || ||| ||| || |||| || | ||| ||| |||||||||| Sbjct 7075328 GGAGGCCCATAGGGGTCCTGACGGGCAATTCAGTTGTCCGTCCGGGGAATAGGGGCGA 7075271 >seq3 Length=107953029 Score = 105 bits (116), Expect = 3e-20 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||| |||||| ||||||| ||||| |||| || || | |||||||||||||||||| Sbjct 90745250 CTGTTAGGACCCAAAAGATGATGAACCATGCTTGGGCAGAGCGAAGCCAGAGGAAACTCT 90745191 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||| | || ||| ||| ||||||||| ||||| || || |||||| |||| Sbjct 90745190 GGTGGAGGTCCTTAGGGGTCCTGATGTGCAAATCTGTCGTCTAACCTGAGTATAGCGGCG 90745131 Query 683 A 683 | Sbjct 90745130 A 90745130 >seq70 Length=11865675 Score = 100 bits (110), Expect = 1e-18 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || |||| ||||||||||||||| || |||||||| ||| || | Sbjct 11560858 GAGCATGAGCGCAGGTGTTAGGACCCGAAAGATGGCAAATTATGCCTGGGCCGGGCGAGG 11560917 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 ||||||||||| |||||||||| || || || ||| || | ||||| ||||| | Sbjct 11560918 CCAGAGGAAACCCTGGTGGAGGTCCGTAGTGGGCCTGACGCGTGAATCGGTCGTCCGACC 11560977 Query 669 TGGGTATAGGGGCGA 683 ||||| ||||||||| Sbjct 11560978 TGGGTCTAGGGGCGA 11560992 >seq15 Length=56459253 Score = 100 bits (110), Expect = 1e-18 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| |||| | ||||||||| ||||||||||| |||| ||||||||| Sbjct 35308662 GAGCACACGTGTTAGGACTCAAAAGATGGTAAACTATGCCTGGGCAGGGCAAAGCCAGAG 35308603 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| | || | | ||| | ||||||||| || || | |||||| Sbjct 35308602 GAAACTCTGGTGGAGGTGCATAGTGATCCTGACATGCAAATCGGTCATCCAGCCTGGGTA 35308543 Query 675 TAGGG 679 | ||| Sbjct 35308542 TGGGG 35308538 >seq12 Length=67275361 Score = 96.9 bits (106), Expect = 1e-17 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | ||| |||||| |||||| ||||| ||| |||| |||| |||| Sbjct 20530649 GAGCATGAGCACAAGCGTTAGGACCCTAAAGATAGTGAAGTATACCTGGGCAGGGCGAAG 20530708 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 | |||||||||||||||||||| | |||||| || ||||||||| ||| || | Sbjct 20530709 CTAGAGGAAACTCTGGTGGAGGTATGTAGCGGTCCTAATGTGCAAATCAATCATCGCAGC 20530768 Query 669 TGGGTATAGGGGC 681 | || |||||||| Sbjct 20530769 TAGGCATAGGGGC 20530781 Score = 91.5 bits (100), Expect = 6e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 || |||| ||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct 41533222 AATGATGCTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAGCTCTGGTGGAGGGCTGT 41533281 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||| ||| ||||| | || || | |||||||||||| || Sbjct 41533282 ATTGGTCCTGACGTACAAATTGGTCATCTGACCTGGGTATAGGGGTGA 41533329 >seq23 Length=43346337 Score = 95.1 bits (104), Expect = 5e-17 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||| |||||||| |||| ||||||||||||||||||||||||| || ||| || Sbjct 8214333 GTGAATTATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCAGTC 8214392 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||| |||||||||| | ||| || ||||||||||| Sbjct 8214393 CTGACGTGCAAATCAGTTGTCCAACCTGGGTATAGGG 8214429 >seq14 Length=62548349 Score = 84.2 bits (92), Expect = 9e-14 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| |||||| ||||||||||||||||||||| |||||||||||||| |||||| || Sbjct 59950562 GTTAGGACCCAAAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAAGAAACTGTGA 59950503 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||| | || |||| | | |||||| | | ||| | | ||| || |||||| Sbjct 59950502 TGTAGGTCCATAGAAGTTCAGACATGCAAACTGGTTGTCTGACCTAGGTGTAAGGGCGA 59950444 >seq16 Length=55688157 Score = 78.8 bits (86), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 5/113 (4%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| | Sbjct 50433346 GGACCTGAAAGATGGTGAACTAGGCCTGGGCAGGGTAAAGCCAGAGGAAACTCTGGTAAA 50433287 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || | ||| || | | ||||| | || || | |||| |||||||| Sbjct 50433286 GGTCTGTAGCAGT-----CCTACAAATTGGTCATCCGACCTGGGCATAGGGGC 50433239 >seq55 Length=15682463 Score = 77.0 bits (84), Expect = 1e-11 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | ||| |||||||||||||||||||| | ||| ||||||||||||||| ||| Sbjct 8043792 TGTTAGAACCTGAAAGATGGTGAACTATGCCCGGGCAGGCCGAAGCCAGAGGAAACCCTG 8043851 Query 624 GTGGAGGCTC 633 ||||||| || Sbjct 8043852 GTGGAGGTTC 8043861 >seq6 Length=99875478 Score = 77.0 bits (84), Expect = 1e-11 Identities = 95/129 (74%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | ||||||||||| ||||| ||| ||| ||||||| |||| |||| |||| Sbjct 85153811 GAGCACACCTGTTGGGACCGGAAAGGTGGCGAATGATGCCTGGGCAGGG-CAAGCGAGAG 85153869 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||| ||| | || ||| ||| ||| ||| | ||| | | |||| Sbjct 85153870 GAAACTCTGGTGCAGGTCCATAGTGGTCCTGATGTGTAAAACAGGTGTCCGACCTAGGTA 85153929 Query 675 TAGGGGCGA 683 |||||| || Sbjct 85153930 TAGGGGTGA 85153938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079949549600