Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq306 219 7e-55 seq86 194 3e-47 seq24 174 3e-41 seq43 131 3e-28 seq17 100 5e-19 >seq306 Length=129866 Score = 219 bits (242), Expect = 7e-55 Identities = 203/249 (82%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| | Sbjct 891 GTCAGTGTAGCGCGCGTGCAGCCCGGA-CATCTAAGGGCATCACAGACCTGTTATTGC-T 948 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA--GCCAGCCACCAACCATAG 132 ||| || | |||||| | |||| | |||||||||||| | | | || ||| Sbjct 949 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAGTTGGGGGACGCCGACCGCTC 1007 Query 133 TCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | | | ||| |||||| | | ||||||||||||||||||||||||||||||| Sbjct 1008 GGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 1067 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| ||||||||||||||||| |||||||||||||||||| ||||| || ||||||||| Sbjct 1068 ATCGCTCCACCAACTAAGAAC-GCCATGCACCACCACCCACGGAATCGAG-AAGAGCTAT 1125 Query 250 CAATCTGTC 258 ||||||||| Sbjct 1126 CAATCTGTC 1134 >seq86 Length=7055517 Score = 194 bits (214), Expect = 3e-47 Identities = 196/248 (79%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGG-CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 ||||||||||||| | ||| | |||||| |||||||| ||||||||||||||||||||| Sbjct 4112557 GTCAGTGTAGCGCCCATGCAGTCCCAGA-CATCTAAGAGCATCACAGACCTGTTATTGC- 4112500 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT--A 131 |||| || | ||||| | ||| | ||||||||||| || | || ||| | Sbjct 4112499 TCAATCT-CGGGTGGCTAAACACCACTTGTCCCTCTAAGTTGCAGGATGCCGACCGCTCA 4112441 Query 132 GTCGATGGGG--CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | || ||| ||| || | | ||||| || ||||| |||||||||||||||| Sbjct 4112440 GGGGTTGCATAACTAGTTACCATGCCAGAGTCTCATTTGTTATTGGAATTAACCAGACAA 4112381 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||| Sbjct 4112380 ATCACTCCACCAACTAAAAACAGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTAT 4112321 Query 250 CAATCTGT 257 |||||||| Sbjct 4112320 CAATCTGT 4112313 >seq24 Length=42784276 Score = 174 bits (192), Expect = 3e-41 Identities = 172/218 (79%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||| |||||| |||| | ||||||||||||||||| ||||||||| ||| ||| Sbjct 36806256 CAGTGTAGCGTGCGTGCAGCCCCGGACATCTAAGGGCATCACGGACCTGTTACTGC-TCA 36806314 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA-- 131 | || | |||||| | |||| | |||||||||||||| | |||||||| Sbjct 36806315 ATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCAACCGCTCC 36806373 Query 132 ---GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 |||| | ||| |||||| | | ||||| ||| |||||||||||||||||||| Sbjct 36806374 GGGGTCG-TATAACTAGTTAGCATGCCATAGTCTCCTTCATTATCGGAATTAACCAGACA 36806432 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||||||||||||||||||||||| ||||||||| ||| Sbjct 36806433 AATCACTCCACCAACTAAGAACGGTCATGCACCAACAC 36806470 Score = 84.2 bits (92), Expect = 3e-14 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||| Sbjct 36806562 AACTAAGAACG-CCATACACCACCACCCATGGAATCGAGAAAGAGCTATCAATCTGTC 36806506 >seq43 Length=20144005 Score = 131 bits (144), Expect = 3e-28 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 167 CGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 |||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||| Sbjct 17499251 CGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTACGAATGGCCACGCACCACCAC 17499192 Query 227 CCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| |||| ||||||||||||||||||||| Sbjct 17499191 CCACGGAATTGAGAAAGAGCTATCAATCTGTC 17499160 >seq17 Length=51904812 Score = 100 bits (110), Expect = 5e-19 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 ||||||| ||||| | |||||||||||||||||||||||||||| |||| || |||| Sbjct 49812911 TAACCAGGCAAATGGTTTCACCAACTAAGAACGGCCATGCACCACCTTCCATGGATTCAA 49812852 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||||||| |||||| Sbjct 49812851 GAAAGAGCTATCAGTCTGTC 49812832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796781844912