Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq306 163 5e-38 seq24 158 2e-36 seq86 127 4e-27 seq4 80.6 5e-13 >seq306 Length=129866 Score = 163 bits (180), Expect = 5e-38 Identities = 197/256 (77%), Gaps = 9/256 (4%) Strand=Plus/Minus Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | ||| | |||| || | ||||| |||||||||||||||||| Sbjct 986 TCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTGAT 929 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 ||||||||||| || |||| ||||||||||||||||||| | || || || | | || Sbjct 928 GCCCTTAGATG-TCCGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTACCC 870 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 | ||||| ||| |||||| | || || | | ||||| ||||||| | | | |||| Sbjct 869 TACGCCGGCAGGCGCGGGTAA-CCCGTGAACCCCATTCGTGATGGGGATCGGGGA-TGCA 812 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 |||||| | | | |||||||||| || |||||| ||| ||||| ||| ||| |||||| Sbjct 811 ATTATTCCCCATGAACGAGGAAT-CCCAGTAAGTGCGGGTCATAAGCTTGCG-TGATTAA 754 Query 313 GTCCCTGCCCTTTGTA 328 || ||||||||||||| Sbjct 753 GT-CCTGCCCTTTGTA 739 >seq24 Length=42784276 Score = 158 bits (174), Expect = 2e-36 Identities = 192/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| || ||||||||| ||| Sbjct 36806352 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATTGAG-CAGTAACAGGTCCGTG 36806295 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||| |||||||||| | | || | || | | Sbjct 36806294 ATGCCCTTAGATGTCCGGGGCTGCACGCACGCTACACTGCCTGGCTCAGCATGTGCCTGT 36806235 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | || |||| ||||||| | | || | | ||||| ||||||| | | |||| Sbjct 36806234 CCTACGTGGGCAGGTGTGGGTAACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTG 36806175 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | |||| | ||||| || |||||| ||| ||||| | | ||||||||| Sbjct 36806174 CAATTATTCACCATCAATGCGGAATTCCCAGTAAGTGCGGGTCATAACCTTGCGTTGATT 36806115 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||| ||||||| Sbjct 36806114 AAGTCCCTGCACTTTGTA 36806097 >seq86 Length=7055517 Score = 127 bits (140), Expect = 4e-27 Identities = 167/225 (74%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC-GCACGCGCGCTA 164 || ||||| |||||||||||||||||||| ||||||||| ||||| | ||| | |||||| Sbjct 4112493 AGATTGAG-CAATAACAGGTCTGTGATGCTCTTAGATGT-CTGGGACTGCATGGGCGCTA 4112550 Query 165 CACTGACAGAGCCAACGA-GTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAA 223 ||||||| | | | || || | | || || | ||| |||||| | | | || Sbjct 4112551 CACTGACTG-GTTGAGGATGTGCCTACTCTACACCAGCAGGCTCGGGTAACCCTTTGAAC 4112609 Query 224 CTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTA 283 | | ||||| |||| || | | |||||||||||| | | | || ||||||| | |||| Sbjct 4112610 CCCATTCGTGATGGGAATCGGGGATTGCAATTATTCCCCATGAATGAGGAATTCTCAGTA 4112669 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| || | ||| |||||||||| ||||||||||||||| Sbjct 4112670 AGTGCGGGTTGTAAGCTTGCGTTGATTAATTCCCTGCCCTTTGTA 4112714 >seq4 Length=102905069 Score = 80.6 bits (88), Expect = 5e-13 Identities = 73/91 (80%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCA 297 |||| | | ||||| ||||| | | | |||||||||| || |||||| ||| ||||| | Sbjct 55204611 GGATCGGGGATTGCT-TTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAA 55204669 Query 298 GCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | |||||||||| |||||||||||||||| Sbjct 55204670 TCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 55204700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947177721856