Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq82 340 6e-91 seq30 286 1e-74 seq21 257 5e-66 seq1 241 4e-61 seq59 196 2e-47 seq6 183 1e-43 seq25 152 2e-34 seq46 141 3e-31 seq66 140 1e-30 seq15 118 3e-24 seq11 118 3e-24 seq14 113 1e-22 seq1322 105 2e-20 seq23 98.7 3e-18 seq19 86.0 2e-14 seq103 75.2 4e-11 >seq82 Length=7794654 Score = 340 bits (376), Expect = 6e-91 Identities = 229/256 (89%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||| |||| ||| ||||| | | |||||| ||||||||||| Sbjct 7075642 CTCCCACTTATTCTACACCCCTCATGTCTCTTCACTGTGCCAGACTAGCGTCAAGCTCAA 7075583 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||||||||| ||||||||| |||||| ||||||||||||||||||| ||| | Sbjct 7075582 CAGGGTGTTCTTTCCCCACTGATTCCGTCAAGCCTGTTCCCTTGGCTGTGGTTTTGCTGG 7075523 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| ||| |||||||||||||| || |||||||||| |||||||||||||||||| Sbjct 7075522 ATAGTAGGTAGTAACAGTGGGAATCTCCTTCATCCATTCATACGCGTCACTAATTAGATG 7075463 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 7075462 ACAAGGCATTTGACTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCACTTTA 7075403 Query 477 TTGAATTTCTTCACTT 492 |||||||||||||||| Sbjct 7075402 TTGAATTTCTTCACTT 7075387 >seq30 Length=33571567 Score = 286 bits (316), Expect = 1e-74 Identities = 205/237 (86%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 |||||||||||||||||||||||| |||| ||| ||| |||||||||||||| Sbjct 21065823 AGCTCAACAGGGTCTTCTTTCCCCACTGACTCCT--------GTTACCTTGGCTGTGGTT 21065772 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 21065771 TCGCTGGATAGTAGATAGGGACAGTGGGAATCTTGTTAATCCATTCATGCGTGTCACTAA 21065712 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||||| |||||||||||||||||| |||||||||||||||||||||| | |||||||| Sbjct 21065711 TTAGACAACGAGGCATTTGGCTACCATAAGAGAGTCATAGTTACTCCCACTGTTTACCCA 21065652 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 |||| | ||||||||||||| |||||||||||| | |||||||||||| ||| Sbjct 21065651 GGCTTCG----GTTTCTTCACTTTGGCATTCAGAGCACAGAGCAGAAATCACAGTGC 21065599 >seq21 Length=46401353 Score = 257 bits (284), Expect = 5e-66 Identities = 238/299 (80%), Gaps = 11/299 (4%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||| |||||||| | | ||||| | | || ||||||||| ||||| Sbjct 18649137 CTCCCACTTATTCTATACCTCTCATGACTCTTCACCACC-CAGAGTAGAGTCAAACTCAA 18649195 Query 297 CAGGGTCTTCTTTCCCC-----GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 || | || | ||| || |||| ||||||||| ||||||||||||||||||| Sbjct 18649196 CACGACCTCCCCCACCCCACATGCCAATTCTGCCAAGCCCCTTCCCTTGGCTGTGGTTTC 18649255 Query 352 GCTAGATAG----TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 || ||||| ||| ||||||||||| ||||| |||| |||| |||| | | |||| Sbjct 18649256 ACTGGATAGCAAGTAGGTAGGGACAGTGCGAATCCCGTTCATCCGTTCACACATGCCACT 18649315 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 || ||||||| |||| |||||||||||||||||||||||| |||| |||| | | ||||| Sbjct 18649316 AAGTAGATGAGGAGGTATTTGGCTACCTTAAGAGAGTCAT-GTTAGTCCCACTGGTTACC 18649374 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGC 526 | || | |||||||||||||||||| || ||||||||||||||||||||||||| || Sbjct 18649375 CACGTTCCATTGAATTTCTTCACTTTGTCAGTCAGAGCACTGGGCAGAAATCACATAGC 18649433 >seq1 Length=129759341 Score = 241 bits (266), Expect = 4e-61 Identities = 172/198 (87%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||| || ||||| || ||| ||||| | | |||||| ||||| |||| || Sbjct 129237089 CCCACTTATTTTATACCTCCCATGTCTCTTCACGGTGCCAGACTAGGGTCAAACTCAGCA 129237148 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 | ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 129237149 GCATCTTCTTTCCCTGCTGATTCCGCCAAGCCTGTTCCCTTGGCTGTGGTTTGGCTGGAT 129237208 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||| ||||||||||||||||||| || |||||||||||| | ||||||||||||||| Sbjct 129237209 AGTAGGTAGGGACAGTGGGAATCTCTTTCATCCATTCATGCACATCACTAATTAGATGAT 129237268 Query 419 GAGGCATTTGGCTACCTT 436 |||||||||||||||||| Sbjct 129237269 GAGGCATTTGGCTACCTT 129237286 Score = 188 bits (208), Expect = 2e-45 Identities = 194/256 (76%), Gaps = 21/256 (8%) Strand=Plus/Minus Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||| || |||||||| || | |||| | | | |||||||| |||||||||||| Sbjct 128004546 ACTTTTT-TACACCTCCCATAACTCTTCAGTATGCCAGACTAGAGCTGAGCTCAACAGGG 128004488 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 || |||| || | |||||| |||||||| |||||||||||||||||| ||| |||| | Sbjct 128004487 TCCTCTTCCCTCATTGATTCTACCAAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAAT 128004428 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 | ||||||||||||||||| | ||| ||||||||||| | ||||||||||||||| Sbjct 128004427 ATATAGGGACAGTGGGAATTTTGTTTATCCATTCATGTGTGTCACTAATTAGATG----- 128004373 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 | |||||||||||||||||||||| ||||||| | ||| ||||| Sbjct 128004372 --------------TCAGAGAGTCATAGTTACTCCCGCTATTTACCCACACTTCATTGAA 128004327 Query 482 TTTCTTCACTTTGACA 497 | |||||| || |||| Sbjct 128004326 TCTCTTCA-TTGGACA 128004312 >seq59 Length=14585272 Score = 196 bits (216), Expect = 2e-47 Identities = 144/168 (86%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||| | || ||||||||||| || | ||||||||| ||||| || Sbjct 12704488 TAGGGACAGTGGGAATTGCTTTCATCCATTCATGGATGTTAATAATTAGATAACGAGACA 12704547 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||| ||||||| |||||||| | |||||||||| ||| |||||||| Sbjct 12704548 TTTGGCTACCTTAAGAAAGTCATATTTACTCCCACAGTTTACCCGCACTTCATTGAATTT 12704607 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 |||||||||||| | |||||||||| ||||||||||||| |||| || Sbjct 12704608 CTTCACTTTGACTTGCAGAGCACTGAGCAGAAATCACATCTCGTCTAC 12704655 >seq6 Length=99875478 Score = 183 bits (202), Expect = 1e-43 Identities = 181/232 (78%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||| ||||||||||| | | || ||||| | ||||||| || || || | ||||| Sbjct 74863648 AAGCTTAACAGGGTCTT--TACTCCATTGATTTTGTCAAGCCCATTGCCCTGACAGTGGT 74863591 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||| || |||||||| ||||||||||| |||||| || |||| |||||| || |||||| Sbjct 74863590 TTCACTGGATAGTAGGTAGGGACAGTGAGAATCT--TTCATCCGTTCATGGGCATCACTA 74863533 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 || ||| || ||| |||||||||||| ||||||||| ||| || |||| | ||||| Sbjct 74863532 ATAAGAAGATAAGGTATTTGGCTACCTAAAGAGAGTCTTAGATATTCCCATCAGTTACCT 74863473 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || ||| || | | |||| |||||||| |||||| ||| | ||||||||| Sbjct 74863472 GCACTTCTTTCAGTGTCTTTACTTTGACGATCAGAGTACTAGACAGAAATCA 74863421 >seq25 Length=42373024 Score = 152 bits (168), Expect = 2e-34 Identities = 89/92 (97%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 22658796 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCA 22658855 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||| ||||||||| Sbjct 22658856 GAGCACTGGGCAGAAATCACATCGCGTCAACA 22658887 >seq46 Length=18364239 Score = 141 bits (156), Expect = 3e-31 Identities = 116/140 (83%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAG-TCGGACTAGAGTCAAGCTCAAC 297 ||||| |||||||||||||||| ||| ||||| | | | | | || | ||||||| Sbjct 12051494 CCCACATATTCTACACCTCTCATGTCTCTTCACCATGCTACCATGACAGACTAGCTCAAG 12051435 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||| ||||||||| |||||||| |||||||||||||||||| | | || Sbjct 12051434 AGGGTCTTCTTTCCCTGCTGATTCCACCAAGCCCATTCCCTTGGCTGTGGTTTTGTTGGA 12051375 Query 358 TAGTAGATAGGGACAGTGGG 377 ||||| ||||||||||||| Sbjct 12051374 CAGTAGGTAGGGACAGTGGG 12051355 >seq66 Length=12789886 Score = 140 bits (154), Expect = 1e-30 Identities = 143/190 (75%), Gaps = 14/190 (7%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || ||||||| ||||| ||||||| ||| |||||| | | | |||||||||||| | | Sbjct 5759629 CTTCCACTTAGTCTACCCCTCTCATGTCCCTTCACAGTGCCAGGCTAGAGTCAAGCCCGA 5759570 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||| ||| ||| ||||| || ||| | ||||||| |||||||||||||||||||| || Sbjct 5759569 CAGAGTCGTCTGTCCCCTCTAATTTCACCAAGCCAGTTCCCTTGGCTGTGGTTTCACTGA 5759510 Query 357 ATAGTAGATAGGGACAGTGG--------------GAATCTCGTTAATCCATTCATGCGCG 402 ||||||| ||| ||||||| |||||||||| || ||| |||| || Sbjct 5759509 ATAGTAGGCAGGAACAGTGGGAATGCGGGAATGGGAATCTCGTTCATGGATTTATGCACG 5759450 Query 403 TCACTAATTA 412 || ||||||| Sbjct 5759449 TCCCTAATTA 5759440 Score = 127 bits (140), Expect = 7e-27 Identities = 99/120 (83%), Gaps = 10/120 (8%) Strand=Plus/Minus Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCG 471 |||||| ||| ||||||||||||||||||||||||| ||||| ||| | |||| | Sbjct 5759268 AGATGATGAGTCATTTGGCTACCTTAAGAGAGTCATGGTTACACCCACTGTTTCAC---- 5759213 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| Sbjct 5759212 ------TGAATTTCTTCACTTTGACATTCAGAGCACTGGACAGAAATTACATTGTGTCAA 5759159 >seq15 Length=56459253 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 32160428 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 32160487 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 32160488 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 32160542 Query 127 GGCCCGCG 134 || |||| Sbjct 32160543 GGGTCGCG 32160550 >seq11 Length=69444150 Score = 118 bits (130), Expect = 3e-24 Identities = 114/146 (78%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||| ||| || | || |||||||||| || ||||||||| | ||||||| || Sbjct 40995693 AGTGTGAAAATCATCCATGCATTCATGCGTGTGG----TTAGATGACAAAGCATTTGACT 40995748 Query 432 ACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 |||| |||| |||||||||||| ||| | |||||| | |||| |||||||||||||| Sbjct 40995749 ACCTGAAGAAAGTCATAGTTACACCCATCATTTACCTGGGCTTCTGTGAATTTCTTCACT 40995808 Query 492 TTGACATTCAGAGCACTGGGCAGAAA 517 | | ||||||||| ||||||||||| Sbjct 40995809 TAGGCATTCAGAGTGCTGGGCAGAAA 40995834 Score = 82.4 bits (90), Expect = 2e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||||| ||||||| |||| |||| || |||||| ||| |||| Sbjct 20090661 CTTCTGCTCCACAGGAATTTTCTGTCCTCCCTGAGCTGGCCGTAGGACCCCTATGTTACT 20090602 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATG 111 |||| |||| ||| | ||||||| ||||||||||||| | || || Sbjct 20090601 GTTTGACAGGTGTACTGCCCCAGGCAAACTCCCCACCGGGCACTG 20090557 >seq14 Length=62548349 Score = 113 bits (124), Expect = 1e-22 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 || |||||| |||||||||||||||||| |||||||| ||||| ||| || |||||||| Sbjct 35288949 AGCCAAGCTTAACAGGGTCTTCTTTCCCTGCTGATTCTGCCAAACCCATTTCCTTGGCTC 35288890 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGT 374 ||||||| || |||||||| |||||||||| Sbjct 35288889 TGGTTTCACTGGATAGTAGGTAGGGACAGT 35288860 >seq1322 Length=8797 Score = 105 bits (116), Expect = 2e-20 Identities = 89/107 (83%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 1226 CTTCTGCTCCAC-GGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 1284 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | || |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 1285 G-TTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 1330 >seq23 Length=43346337 Score = 98.7 bits (108), Expect = 3e-18 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||||| ||||| ||||| ||||||| | |||||||| || || || |||| |||| Sbjct 3302162 TCAACAGGATCTTCCTTCCCTGCTGATTTCACCAAGCCCCATCGCTCGGTTGTGTTTTCT 3302103 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 | |||| || ||||||||||||||||||| || ||||||| Sbjct 3302102 GTGGATACAAGGTAGGGACAGTGGGAATCTCATTGATCCATT 3302061 >seq19 Length=50675436 Score = 86.0 bits (94), Expect = 2e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | ||| ||||||| |||| | || ||||||||||||||||| | Sbjct 42004387 CTTCTGCTCAATGAGAGGTTTCTGTCCTCCCTAAGCTTGCCTTAGGACACCTGCGTAACT 42004328 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||| ||| | |||||||||||||||||||||| || |||| Sbjct 42004327 GTTTGGCAGGTGTACTTCCCCAGCCAAACTCCCCACCTGGCACTGTC 42004281 >seq103 Length=4564343 Score = 75.2 bits (82), Expect = 4e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||||| || ||| ||| |||||||||||||||||||||||| ||||||||||||| | Sbjct 2898258 TTACCTGCACTTCATTGCGTTTCTTCACTTTGACATTCAGAGCTGTGGGCAGAAATCATA 2898199 Query 523 TTGCGTCAACA 533 | || ||||| Sbjct 2898198 TCACGCCAACA 2898188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635161540096