Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1322 100 5e-19 seq85 77.0 5e-12 seq75 77.0 5e-12 >seq1322 Length=8797 Score = 100 bits (110), Expect = 5e-19 Identities = 93/114 (82%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 901 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 844 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 843 GG-GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 791 >seq85 Length=6926877 Score = 77.0 bits (84), Expect = 5e-12 Identities = 91/121 (75%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | | |||| | |||| | | | || |||| || || | Sbjct 705785 GTACGAGAGGAACTGCAGG-TGCAGACAA--TGGTGTATCTGCTTGGCTGAGGAGTCACT 705729 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||||||||||||| || |||||||| |||||| |||||||||||| |||| | ||| Sbjct 705728 GGGGCGAAGCTACCATATGTGGGATTATGACTGAACACCTCTAAGTCAGCATCCCTCCCA 705669 Query 121 G 121 | Sbjct 705668 G 705668 >seq75 Length=10329491 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||| ||| ||| | |||||| | ||||| | || | || |||| || || | Sbjct 2709002 GTACGAGACGAAACGCAGG-TTCAGAC-ATTTGGTGTATGGGTTTGGCTGAGGAGCCAAT 2708945 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| ||||||| ||||| ||||||||||| ||||| Sbjct 2708944 GGGGCGAAGCTACCATCTGTGAGATTATGACTGAATTCCTCTAAGTCAAAATCC 2708891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819181334528