Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq306 343 4e-92 seq4 174 5e-41 seq32 154 4e-35 seq34 138 3e-30 seq2 138 3e-30 seq1 136 1e-29 seq11 123 8e-26 seq13 91.5 4e-16 seq21 87.8 5e-15 >seq306 Length=129866 Score = 343 bits (380), Expect = 4e-92 Identities = 412/550 (75%), Gaps = 56/550 (10%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||||||||||||| | | | |||||| ||||||| ||||| | |||||||||||| Sbjct 1821 ACTCATTCCAATTACAGGCCTCGAAAGAGTCCTGTATGT-TATTTTTCGTCACTACCTCC 1879 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1880 CCGGGTCGG-AGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG-TTC 1937 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||| Sbjct 1938 TCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCG-TGTCACCATGGTAGG 1996 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 | ||||||||||||||||||| |||||| || ||||| | |||||| Sbjct 1997 CACGGCGACTACCATCGAAAGTTGATA-GGCAGACGTTCGAATGGGTCGTCGCCGCACGG 2055 Query 243 AGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGC--------- 284 || | |||||| | | ||||| || ||||||| || || Sbjct 2056 GGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCG 2115 Query 285 -------CCCGAAGGGCGTT-----GGT--TTTTTATCTAATAAATACAC----CCCTTC 326 || || ||| | | ||| |||| |||| |||||| ||| ||| | Sbjct 2116 GCCGGGGCCGGAGGGGAGCTGACCGGGTTGTTTTGATCTGATAAATGCACGCATCCCCCC 2175 Query 327 CGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 || | ||||| | |||||||||||||||||||||||||| |||||||| Sbjct 2176 CG-CGAGGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAA 2234 Query 380 GTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 |||| | || | | | |||| ||| |||||||||||||||||||||||||||||| Sbjct 2235 GTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTT 2294 Query 435 CACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGA 494 ||||||| | | |||||||||||||||||||||||| |||||||||||||||| Sbjct 2295 CACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATC-TTGAGACAAGCATATG- 2352 Query 495 CTACTGGCAG 504 |||||||||| Sbjct 2353 CTACTGGCAG 2362 >seq4 Length=102905069 Score = 174 bits (192), Expect = 5e-41 Identities = 148/181 (82%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||||| |||||||| | |||||| ||||||| ||||| |||||||||||| | Sbjct 62638664 CTCATTGCAATTACAGTGCTTTGAAAGAGTCCTGTATTGTTATTTTTTGTCACTACCTTC 62638723 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || ||| ||| ||||||||||| |||||||||||||||||||| |||||||||| |||| Sbjct 62638724 CCAAGTCAGGAGTGGGTAATTTGTGCGCCTGCTGCCTTCCTTGGCTGTGGTAGCCATTTC 62638783 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 |||||||||||||| | |||| |||||| |||| | || ||| || | ||||||| ||| Sbjct 62638784 TCAGGCTCCCTCTCTGAAATCAAACCCTGATTCACTGTCACCTGTGGCCACCATGGCAGG 62638843 Query 183 C 183 | Sbjct 62638844 C 62638844 Score = 120 bits (132), Expect = 9e-25 Identities = 90/103 (87%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||||||| |||||||||||||| ||||||| |||| || | | | | ||||||||| Sbjct 62638874 ACCATAACTGGTTTAATGAGCCATTTGCAGTTTGACTGAATGGCT-GTGTGTACTTAGAC 62638932 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 62638933 ATGCATGGCTTAATCTTTGAGGCAAGCATATG-CTACTGGCAG 62638974 >seq32 Length=29745944 Score = 154 bits (170), Expect = 4e-35 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 3664077 GGGTAATTTGCATGCCTGCTGCTTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCT 3664136 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTA-TCCTAC 194 || |||||||||||| ||||||| | ||| | | ||||||||||| ||| | || Sbjct 3664137 CCTGAATCGAACCCTGATTCCCCATCGCCCATGGTCACCATGGTAGG-CACAAGGATTAT 3664195 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 |||| ||| || ||| |||||| ||| ||||| ||||||| Sbjct 3664196 CATCAAAAATTTATACGGCAGATATTCGAATGGGTCATCGCC 3664237 >seq34 Length=27469976 Score = 138 bits (152), Expect = 3e-30 Identities = 125/154 (81%), Gaps = 10/154 (6%) Strand=Plus/Plus Query 69 CGGGATTGGG-TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 ||||| |||| |||||||| |||||||||||||||||||||||||||| |||||| | | Sbjct 8490076 CGGGAGTGGGGTAATTTGCATGCCTGCTGCCTTCCTTGGATGTGGTAGCTGTTTCTTATG 8490135 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 |||||| || ||||| ||||||| ||| ||| | ||| || ||||||||||| | Sbjct 8490136 CTCCCTTTCTGGAAT-GAACCCTGATTTCCCATCACCGGTGTTCACCATGGTAGG----T 8490190 Query 188 AT----CCTACCATCGAAAGTTGATAGGGCAGAA 217 || |||| |||||||||||||||||||||| Sbjct 8490191 ATGGCAACTACTATCGAAAGTTGATAGGGCAGAA 8490224 >seq2 Length=111286942 Score = 138 bits (152), Expect = 3e-30 Identities = 139/174 (80%), Gaps = 10/174 (6%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-AG--GTA--CT 392 ||||| |||||||||||||||||||||||||| ||||||| |||| | || ||| | Sbjct 79683620 TTTTTGGCATGTATTAGCTCTAGAATTACCACAATTATCCAAGTAGGAGAGGAGTAAGCA 79683561 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCT 450 | |||| || | ||||| |||||| |||| ||| ||||||||||||| | ||| Sbjct 79683560 ACCAAAGAAGCCATAACCAATTTAACAAGCCGTTCACAGTTTCACTGTACTGGCCATGC- 79683502 Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||| |||||||||||||||| |||| |||||||||| Sbjct 79683501 -ATACATAGACATGCATGGATTAATCTTTGAGACAAATGTATG-CTACTGGCAG 79683450 >seq1 Length=129759341 Score = 136 bits (150), Expect = 1e-29 Identities = 169/224 (75%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 6 CATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 ||||||||||||| | || || | | | || || ||||| || || ||||||||| Sbjct 42577438 CATTCCAATTACAGGGCCTGGAACGGGTCATGCATTGTTATTTTTT-TCTCTACCTCCCT 42577380 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | ||| || ||||||||||| | ||| ||||||| | || |||||||||||| |||||| Sbjct 42577379 GGGTCCAGAATGGGTAATTTGTGTGCCAGCTGCCTACTTTTGATGTGGTAGCCATTTCTC 42577320 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC- 183 || ||| ||||| |||| ||||||| ||| ||| | ||| | | |||||||||||| Sbjct 42577319 AGATTCCTTCTCCAGAATTGAACCCTGATT-CCCATCACCATTGGTCACCATGGTAGGCA 42577261 Query 184 -CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 || | |||||||| ||| |||||||| ||| || ||||| Sbjct 42577260 TGACAA--CTACCATC-AAAACTGATAGGGTAGACGTTCGAATG 42577220 >seq11 Length=69444150 Score = 123 bits (136), Expect = 8e-26 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||| | | | | ||||||||||||||| |||||||| |||||||| || |||| Sbjct 35387472 GGGTAATTCACACTCTTCCTGCCTTCCTTGGATATGGTAGCCTTTTCTCAGACTTGCTCT 35387413 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACC 195 | ||| || |||||| ||||| | | |||| | | ||||||||| || || ||||| Sbjct 35387412 CTGGAGTCAAACCCTGATTCCTCATCACCCTTGGTCACCATGGTACGCATGTAAACTACC 35387353 Query 196 ATCGAAAGTTGATAGGGCAGA 216 || |||||||||||||||||| Sbjct 35387352 ATTGAAAGTTGATAGGGCAGA 35387332 >seq13 Length=65937429 Score = 91.5 bits (100), Expect = 4e-16 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||| ||| ||||||||||| | |||| |||| |||||||||||||||| |||||||| Sbjct 17509816 GTCTGGAATGGGTAATTTGTGTGCCTACTGCTTTCCTTGGATGTGGTA---GTTTCTCAA 17509872 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCC 157 ||| | ||||| |||| ||| ||| |||||| Sbjct 17509873 GCTTCATCTCCAGAATTGAATCCTGATTCCC 17509903 >seq21 Length=46401353 Score = 87.8 bits (96), Expect = 5e-15 Identities = 89/114 (78%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || |||||| || ||| ||||| ||||||| || Sbjct 43015025 ACTCATTCCAATTACACGGCCTTGAAAGAGTTCTTTATTGTTATTT--TGTCACTGTCTT 43015082 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 || ||||| | |||||||||||| | ||||||||| ||||||||| |||||| Sbjct 43015083 CCTGTGTCAACAGTGGGTAATTTGCACACCTGCTGCCATCCTTGGATTTGGTAG 43015136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510364475392