Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq80 102 6e-17 seq9 89.7 4e-13 >seq80 Length=8685383 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| || || |||| ||||| || Sbjct 8324368 GGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 8324309 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | |||||| || || || || || || Sbjct 8324308 GTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTTTCTGTCTG 8324249 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 8324248 AGACTCAATGATGGCATACCAAAG 8324225 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 ||||||||| |||| ||| |||| || | || || |||||||||| || ||||| | Sbjct 8331312 CTCCTTGGCCAGTTCACAACTGGCTTCCAAGGCTCCATAATAAATGGTTTCAAAAATTTG 8331253 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGT 65813 ||| | | ||||||| ||||| | || ||||| |||||||| ||||| | Sbjct 8331252 CTTATTCAATAATTGTGCCTCTGGACTCTCAAAAGG-ATACCTCATCAGGATAAAAGCAT 8331194 Query 65814 CGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 | ||||||||||| || ||||| || | ||| ||||| || Sbjct 8331193 CTGCCAGACCTTGTACCCCAATTCCAACGGGGCGATGGCG 8331154 >seq9 Length=85640724 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 |||||||| || || | ||||| || |||||||| ||||| || ||| ||| ||||| Sbjct 49099022 CAGGAGGTACAGGTTCCAGAGGCCCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAC 49098963 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 49098962 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 49098916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397556603713280