Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq261 138 2e-30 seq151 111 2e-22 seq130 78.8 1e-12 seq182 75.2 2e-11 >seq261 Length=5070672 Score = 138 bits (152), Expect = 2e-30 Identities = 174/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| || ||||| ||||| || |||||| |||||| | Sbjct 2381724 GTACAAAGGGCAGGGACTTAATCATTGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 2381667 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | | || ||||||||| ||||||||||||| ||||| | || Sbjct 2381666 TTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAAGGGGTT 2381607 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| |||| |||| ||| | | || || ||| ||||||||| || | ||| Sbjct 2381606 ACCCATGCCTGCCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGTGCACATGCA 2381547 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 2381546 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 2381494 >seq151 Length=8490631 Score = 111 bits (122), Expect = 2e-22 Identities = 171/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 |||||||||||||||| || |||| || ||||| ||||| | |||||| |||| |||| Sbjct 8357710 TACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTACACTTACT-GGAAATTCC 8357767 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTA 120 || || | | || ||||||||| ||||||||||||| | ||||| || ||| Sbjct 8357768 TCATTCATGGGGAATAATTGCAATCCAG-ATCCCCATCACGAAAGAGGTTCAACAGGTTA 8357826 Query 121 CCCGGACCTGTCGGCCAAGGT--GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | | ||||| |||| || | ||| | | ||| ||| ||||| | || ||| Sbjct 8357827 CT-GCACCTG----CCAATGTAGGGTAGGCACTCTGAGCCAGTCACTGTAGTGAGCATGC 8357881 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||||||||||||||| ||||||||||||| ||||| || ||||| Sbjct 8357882 AGCCCCAGACATCTAAGGGCATCATAGACCTGTTATTG-CTCAATCTCGGGTGGC 8357935 >seq130 Length=8672310 Score = 78.8 bits (86), Expect = 1e-12 Identities = 161/234 (69%), Gaps = 18/234 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | || || | ||| ||| |||||| |||| ||| Sbjct 3195737 GTACAAAGGGCAGGGACTTAATCAACACAAGGTT-AAGACCCGCACTTACTGGGAA-TTC 3195794 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | || ||||| ||| | ||||||||||||| ||||| Sbjct 3195795 CTCATTCATGGGGAATAATTGTAATCCCCAATCCCCATCACGAATGGGGTTCAA------ 3195848 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGCG 179 |||| |||| || | || || | || || ||||| || | | |||| Sbjct 3195849 -----TCCTGCCGGCGTAGAGTAGGCACACGCT-AAGCCAGTCAGTATA--GTGAGTGCA 3195900 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| ||||| |||||||||||| |||||| |||| ||||| || ||||| Sbjct 3195901 GCCCCAGACATCGAAGGGCATCACACACCTGTAATTG-CTCAATCTCAGGTGGC 3195953 >seq182 Length=6978847 Score = 75.2 bits (82), Expect = 2e-11 Identities = 61/73 (84%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||| | ||| |||| ||||||||||||||||||||||||||| || ||| Sbjct 5935399 TCAGTGTAGCGCTCATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTACTG-CTC 5935341 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 5935340 AATCTCGGGTGGC 5935328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751836021935