Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq261 138 2e-30
seq151 111 2e-22
seq130 78.8 1e-12
seq182 75.2 2e-11
>seq261
Length=5070672
Score = 138 bits (152), Expect = 2e-30
Identities = 174/234 (74%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||| || ||||| ||||| || |||||| |||||| |
Sbjct 2381724 GTACAAAGGGCAGGGACTTAATCATTGCAAGCTT-ATGACCTGCACTTACTGGGAATT-C 2381667
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||||| | | || ||||||||| ||||||||||||| ||||| | ||
Sbjct 2381666 TTCGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAAGGGGTT 2381607
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
|||| |||| |||| ||| | | || || ||| ||||||||| || | |||
Sbjct 2381606 ACCCATGCCTGCCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGTGCACATGCA 2381547
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 2381546 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 2381494
>seq151
Length=8490631
Score = 111 bits (122), Expect = 2e-22
Identities = 171/235 (73%), Gaps = 12/235 (5%)
Strand=Plus/Plus
Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61
|||||||||||||||| || |||| || ||||| ||||| | |||||| |||| ||||
Sbjct 8357710 TACAAAGGGCAGGGACTTAATCAATGCAAGCTT-ATGACCTACACTTACT-GGAAATTCC 8357767
Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTA 120
|| || | | || ||||||||| ||||||||||||| | ||||| || |||
Sbjct 8357768 TCATTCATGGGGAATAATTGCAATCCAG-ATCCCCATCACGAAAGAGGTTCAACAGGTTA 8357826
Query 121 CCCGGACCTGTCGGCCAAGGT--GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
| | ||||| |||| || | ||| | | ||| ||| ||||| | || |||
Sbjct 8357827 CT-GCACCTG----CCAATGTAGGGTAGGCACTCTGAGCCAGTCACTGTAGTGAGCATGC 8357881
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| |||||||||||||||| ||||||||||||| ||||| || |||||
Sbjct 8357882 AGCCCCAGACATCTAAGGGCATCATAGACCTGTTATTG-CTCAATCTCGGGTGGC 8357935
>seq130
Length=8672310
Score = 78.8 bits (86), Expect = 1e-12
Identities = 161/234 (69%), Gaps = 18/234 (8%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||| | || || | ||| ||| |||||| |||| |||
Sbjct 3195737 GTACAAAGGGCAGGGACTTAATCAACACAAGGTT-AAGACCCGCACTTACTGGGAA-TTC 3195794
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||| || | | || ||||| ||| | ||||||||||||| |||||
Sbjct 3195795 CTCATTCATGGGGAATAATTGTAATCCCCAATCCCCATCACGAATGGGGTTCAA------ 3195848
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGCG 179
|||| |||| || | || || | || || ||||| || | | ||||
Sbjct 3195849 -----TCCTGCCGGCGTAGAGTAGGCACACGCT-AAGCCAGTCAGTATA--GTGAGTGCA 3195900
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| ||||| |||||||||||| |||||| |||| ||||| || |||||
Sbjct 3195901 GCCCCAGACATCGAAGGGCATCACACACCTGTAATTG-CTCAATCTCAGGTGGC 3195953
>seq182
Length=6978847
Score = 75.2 bits (82), Expect = 2e-11
Identities = 61/73 (84%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
|||||||||||| | ||| |||| ||||||||||||||||||||||||||| || |||
Sbjct 5935399 TCAGTGTAGCGCTCATGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTACTG-CTC 5935341
Query 221 AAACTTCCGTGGC 233
|| || |||||
Sbjct 5935340 AATCTCGGGTGGC 5935328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751836021935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |