Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1178 165 1e-38 seq351 111 3e-22 seq89 82.4 1e-13 >seq1178 Length=247203 Score = 165 bits (182), Expect = 1e-38 Identities = 188/248 (76%), Gaps = 17/248 (7%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||||| ||| | |||| ||| Sbjct 111608 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCTGCCTGGATACCGCAGCTA 111667 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||||| || || | | ||||| Sbjct 111668 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 111726 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGG 244 ||| |||||| | | ||| | ||||| ||||| ||||||||||||||||| Sbjct 111727 TAAGAGGGATGGCCAGGG------GCATTCATATTGTGCCACTAGAGGTGAAATTCTTGG 111780 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 | ||||| || | |||||||| || ||||| |||||||||||||||| || Sbjct 111781 ACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGA 111839 Query 305 ACGAAAGT 312 |||||||| Sbjct 111840 ACGAAAGT 111847 >seq351 Length=3738858 Score = 111 bits (122), Expect = 3e-22 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| ||||||||||||||||||||| || || | | ||||| Sbjct 2218050 GGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 2217992 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | |||| | | ||| | ||||| | |||||||||||| ||||| Sbjct 2217991 TAAGATGGATGGCCAGGGCCATTCGTATTGCACCACTAGAGGTGAAATTATTGGACCAGC 2217932 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||||||| || ||||| |||||||||||||||| |||||||| Sbjct 2217931 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 2217873 Query 311 GTT 313 ||| Sbjct 2217872 GTT 2217870 >seq89 Length=11090170 Score = 82.4 bits (90), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCA 129 ||||||||||||||| ||||||||||||||||||||| | | |||||| ||| Sbjct 6094776 TTTACTTTGAAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCAACCTGAATACTGCAGCT 6094717 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 ||||| || |||||| || | |||||||||||||||||| | || | |||| Sbjct 6094716 AGGAAT-ATGGAATAGAAC-CACAGTTCTATTTTGTTGGTTTTCGGAACTGAGACCATGA 6094659 Query 190 TTAATAGGGATAGTCGGGGG 209 |||| |||||| | | |||| Sbjct 6094658 TTAAGAGGGATGGCCAGGGG 6094639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914993997632