Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09-
20] 22,509 sequences; 4,444,080,527 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1178 165 1e-38
seq351 111 3e-22
seq89 82.4 1e-13
>seq1178
Length=247203
Score = 165 bits (182), Expect = 1e-38
Identities = 188/248 (76%), Gaps = 17/248 (7%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAGCAT 130
|||||||||||||||||||||||||||||||||||| ||| | |||| |||
Sbjct 111608 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCTGCCTGGATACCGCAGCTA 111667
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| ||||||||| ||||||||||||||||||||| || || | | |||||
Sbjct 111668 GGAATAATGGAATAGGAC-CGCGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 111726
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGT-----CAGAGGTGAAATTCTTGG 244
||| |||||| | | ||| | ||||| ||||| |||||||||||||||||
Sbjct 111727 TAAGAGGGATGGCCAGGG------GCATTCATATTGTGCCACTAGAGGTGAAATTCTTGG 111780
Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304
| ||||| || | |||||||| || ||||| |||||||||||||||| ||
Sbjct 111781 ACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGA 111839
Query 305 ACGAAAGT 312
||||||||
Sbjct 111840 ACGAAAGT 111847
>seq351
Length=3738858
Score = 111 bits (122), Expect = 3e-22
Identities = 136/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| ||||||||| ||||||||||||||||||||| || || | | |||||
Sbjct 2218050 GGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 2217992
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| | |||| | | ||| | ||||| | |||||||||||| |||||
Sbjct 2217991 TAAGATGGATGGCCAGGGCCATTCGTATTGCACCACTAGAGGTGAAATTATTGGACCAGC 2217932
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| || | |||||||| || ||||| |||||||||||||||| ||||||||
Sbjct 2217931 GCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 2217873
Query 311 GTT 313
|||
Sbjct 2217872 GTT 2217870
>seq89
Length=11090170
Score = 82.4 bits (90), Expect = 1e-13
Identities = 105/140 (75%), Gaps = 6/140 (4%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAA-TTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCA 129
||||||||||||||| ||||||||||||||||||||| | | |||||| |||
Sbjct 6094776 TTTACTTTGAAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCAACCTGAATACTGCAGCT 6094717
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
||||| || |||||| || | |||||||||||||||||| | || | ||||
Sbjct 6094716 AGGAAT-ATGGAATAGAAC-CACAGTTCTATTTTGTTGGTTTTCGGAACTGAGACCATGA 6094659
Query 190 TTAATAGGGATAGTCGGGGG 209
|||| |||||| | | ||||
Sbjct 6094658 TTAAGAGGGATGGCCAGGGG 6094639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914993997632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |