Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq3 127 9e-28 seq744 91.5 7e-17 seq237 87.8 8e-16 seq283 78.8 4e-13 seq953 73.4 2e-11 >seq3 Length=36858092 Score = 127 bits (140), Expect = 9e-28 Identities = 88/100 (88%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 12846193 GGAAAAGAAACTAACCAGGATTCCCTCAGTAATGGTGAGTGAACAGGGAAGAGCCCAGCA 12846252 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCG 100 |||||||| || | || ||||| | |||| |||||||| Sbjct 12846253 CCGAATCCTTGCTCTGCATTGGGGTGTGGGAAATGTGGCG 12846292 >seq744 Length=983571 Score = 91.5 bits (100), Expect = 7e-17 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||| ||||| |||||||||||||||||||| | |||||||| ||| ||||||||||||| Sbjct 858376 AAAACAAACTCACCAGGATTCCCTCAGTAACCGGGAGTGAACTGGGGAGAGCCCAGCGCC 858435 Query 63 GAATCCCCGCCCC 75 |||||| | ||| Sbjct 858436 AAATCCCTGTCCC 858448 >seq237 Length=5457736 Score = 87.8 bits (96), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGAT--TCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAG 58 ||||||||||||||||||||| || |||||||| | |||||||||| |||||| | Sbjct 4166416 GGAAAAGAAACTAACCAGGATTCTCTCTCAGTAAGAGTGAGTGAACAGAGAAGAG-TTGG 4166474 Query 59 CGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||| || |||||| | ||||||||| ||||| ||||||| || Sbjct 4166475 TGCC-AACCCCCGCTACACGGTGGGGCACGGGAAATGTGGCCTA 4166517 >seq283 Length=4619534 Score = 78.8 bits (86), Expect = 4e-13 Identities = 61/73 (84%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||| ||||| |||||||||||||||||||| | | ||||| |||||| ||||| || Sbjct 129455 AAAACAAACTCACCAGGATTCCCTCAGTAACCGGGTGTGAAGTGGGAAGGACCCAGTGCT 129514 Query 63 GAATCCCCGCCCC 75 |||||||| |||| Sbjct 129515 GAATCCCCACCCC 129527 >seq953 Length=490111 Score = 73.4 bits (80), Expect = 2e-11 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 |||| ||||| |||||||||||||||||||| | ||||| |||||| ||||| || Sbjct 397545 AAAACAAACTCACCAGGATTCCCTCAGTAACCAGGTGTGAAGTGGGAAGGACCCAGTGCT 397604 Query 63 GAATCCCCGCCCC 75 ||||||| ||||| Sbjct 397605 GAATCCCTGCCCC 397617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230351380560